LOC111192972


Basic Information

Item Value
gene id LOC111192972
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18657276 ~ 18669434 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671439.1
GTGAGCAGCTGATAGTTTTCCAGAAGAAACAGAACGACAGGAAGAAGAGTGAAGTGTCTTCTGTTCAGTTCCAGGAGAAAGTTCAGAGAGAGGAAGCTGAGTGTAATTCTGGAGCTTCAGATATGGAAGCTGTAGTATACAGAGATTCCTGCAGAGCAGAGCATGCTGTAGATTTGAGCACAgcctgtgatgatgatgatgataataatgatgatgatgaagaagatgaagatgCTGAAGATGAAGATTCCCTGGTTTTAGAAACAGTGAAGAACCACAGATTTTGCCAGCAGTCCTGTAGTGTGGACTCTGAGCAGGACTCTGCCCCCCGAAATGCTGAACCGTGCGGAACGGACCCGGACCCGTTCTGTTTGGACTCCAGCCTGCCTTGCTCCGCCTCCAGCCTCAGCGGCTCCAGCAGCTCAGACGACTGGGAGCTGGACGAGGGTCCGGAGATCACTGCTGATCTCCAGCAGGATTCCTGCTCCACCAACAGCagtatgaTAGATGGTGATGGTGTGTTGGTGAGTAAGGTGTGTCAGTGCTGTAGGAGGCGGGGCAGAAGCAGAAGTCAGACTTGCACCATCACAAATTACAAGGAGGATTTTGCAGGAGGTTTAGCAGCTCCACAGATCTTCCTCCATCCTCAGAGGAGAGCGAGGTCAGTGGATGACTCAGTTTCGGATTCCACCGTCGCTCCGGACCTTCTGAACTTTAAACAGGGGTATCTGCTCTTTCTGGATCAGCACGAGCAGtgGAGGAGGTACTGGTCTGTGCTGTCTGTTCACAGCCTGAGGTTCTACTCAAACTCAGGATTAGAGGAGGCAGGTTTACTAATCCTAAACCCGTCACATCAAAACCATCACACTGCAGATCCACAACACTTTCATAACACTCAGATAATAATATCATCTTCTCTCTGAAAGGCTTCAG

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671439.1 True 933 mRNA 0.49 7 18657276 18669434

Neighbor

gene id symbol gene type direction distance location
LOC111192977 NA coding upstream 2587 18652128 ~ 18654689 (+)
LOC103027278 NA coding upstream 23033 18631412 ~ 18634243 (+)
LOC111192973 NA coding upstream 405925 18215692 ~ 18251351 (+)
LOC111192978 NA coding upstream 444200 18196755 ~ 18213076 (+)
LOC107197388 NA coding upstream 464106 18176227 ~ 18193170 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding downstream 17823 18687257 ~ 18706546 (+)
LOC111192965 LOC108435873 coding downstream 321083 18990517 ~ 19019268 (+)
LOC111192912 NA coding downstream 507568 19177002 ~ 19178587 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding downstream 598988 19268422 ~ 19271847 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 617401 19286835 ~ 19305457 (+)
G64980 NA non-coding upstream 41118 18536667 ~ 18616158 (+)
G64991 NA non-coding upstream 87786 18567027 ~ 18569490 (+)
G64834 NA non-coding upstream 151549 18504951 ~ 18505727 (+)
G64816 NA non-coding upstream 232947 18402077 ~ 18424329 (+)
G65019 NA non-coding downstream 42180 18711614 ~ 18759292 (+)
G65044 NA non-coding downstream 122748 18792182 ~ 18840564 (+)
G65053 NA non-coding downstream 164525 18833959 ~ 18834854 (+)
G65116 NA non-coding downstream 232018 18901452 ~ 18908686 (+)
G65122 NA non-coding downstream 275892 18945326 ~ 19032751 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 33777 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 937364 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1769081 16833290 ~ 16888195 (+)
G64449 NA other upstream 1781335 16873087 ~ 16875941 (+)
G64431 NA other upstream 1903716 16753043 ~ 16753560 (+)
LOC103045528 NA other downstream 553775 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 607368 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 610858 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1111229 19780663 ~ 19794325 (+)
G65565 NA other downstream 2287701 20957135 ~ 20957635 (+)

Expression


Co-expression Network