LOC111192973


Basic Information

Item Value
gene id LOC111192973
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18215692 ~ 18251351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671441.1
ATGAGGTTCGGGGGGCTGGTGGTCGCGGCCGGACTCTCTGGGCTGCTGAGCTTTGCTCTGCTCGCGCTCGCCATCGGAACCGAGTACTGGTACATCATTACTGTGGACCAGAACCTGCAGAACCAGCAGAACTCCACCTCCACCAACACCGCCGAGCTCAGCAGCTCACACTCCGGACTCTGGAGGATCTATGAAGAAAGGAACGGGAGTTATCACGCCGTCTCCATCTACATGAACACGACGGAGAGCAGCGAGCATCACCAGCACCTCTCCAATCTGCACAGCGCTATAGTCATCCTGCTTCCTGTCAGCctggtgctgctggtgtttggtgGGATCTTTGGGTTGGTGGCGTCTCTGGCGCGCAGTTATAAGCTACTCTCTGGTGAAGCCGTGTATTTCCTCATCTGCAGTCTCTTCACGCTGTCGGGGGTGTGTATCTACGTCAGTTACTCGGAGCAGGCTCTGGATCTGCTGCAGTGGGAGCTCGGAGCCGAGCTGCCCGACTACGTCCACGTCTCCTTCGGCTGGTCCCTGACCGCCGCCTGCCTGTCCTTCTGCCTGGAGCTGCTCACCAGCGTCCTGCTCACACTGGCAGCACGACTCGCCTACTGCCAGCTCCACCACGAGTCCACCGTCACCCTGTCCATGACCTAGGACACGCCTCTAAAGCAGTCAATCCACGCCCTCACGTTGCAGTTCACGCAAAAATCACCAGCCGGCGTGACTTTCACGATTCTTTCAAGAGTTTTGAGGGAACTGTACTCTTTATTTACTCTGTATTAATTCatgtgttacctcaggggacagctgGATGGAAGACCAATATACTTACAGTATATACGTTTAAGATGTGTATAagatgtgaggtgttatcttgtgaccATTGTCCCATCATGCTCATGGCTAAAAAGGTGTTGTGAATTATCGTGGAGTTGGAGCATCACATGTGTATCTGGAATACCAGAactggtaatgatcatgaccggtggcatctggctagaactgtccatgcgaACGAGTGACTAATTGTACAGAATATGCATGAATGCCATGGTTTCGTTCTCGTCCACTTTCTCTTCATTTGCAACCAGAGCCAATCAGTGCAGTAGAGCTGCTAGAGGTGGAGCCAAACTTGCATACTCATTTGGTAGACCCACCCTCTTACCCTAGAGTCTCAGCCCGCCTTCATTGAGTCATAGAGTGGATTTTATGTAATTTCCCAACAGTAAAGGATCATTTTATGGAAGCAGGTATGGAACAAAGCTCCAGGATCAGATACCAGAAGTCAGAGAATAAAACAGCAGTAAATTGgaacccagaaggactacaagacagaagTCTTGGAGTAGAGTCTCAGcccgccttcattgagtttacagcgcCGTCTAAAGGACTAAAAGTGGACTAAGAGTGGATTTTATGCAACATCCCAGCAGTAAAAAAGCATgtattacatttacatcatATTACAGTACCGTACACTATATTACTCTGTTTACCAATGAGATAAACTCGATTAATGATTCacttacatacagctctgtaaaacaataagagatcagtttagtttctgaatcagtttctctgattttgctattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671441.1 True 1603 mRNA 0.49 4 18215692 18251351

Neighbor

gene id symbol gene type direction distance location
LOC111192978 NA coding upstream 2616 18196755 ~ 18213076 (+)
LOC107197388 NA coding upstream 22522 18176227 ~ 18193170 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding upstream 43455 18161072 ~ 18172237 (+)
LOC103040205 NA coding upstream 83682 17984965 ~ 18132010 (+)
LOC111192979 NA coding upstream 285843 17924346 ~ 17929849 (+)
LOC103027278 NA coding downstream 380061 18631412 ~ 18634243 (+)
LOC111192977 NA coding downstream 400777 18652128 ~ 18654689 (+)
LOC111192972 NA coding downstream 405925 18657276 ~ 18669434 (+)
LOC107197347 NA coding downstream 418081 18669432 ~ 18683116 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding downstream 435906 18687257 ~ 18706546 (+)
G64776 NA non-coding upstream 91793 18114974 ~ 18123899 (+)
G64754 NA non-coding upstream 154362 17972579 ~ 18061330 (+)
G64770 NA non-coding upstream 164449 18050049 ~ 18051243 (+)
G64766 NA non-coding upstream 186937 18028086 ~ 18028755 (+)
G64753 NA non-coding upstream 207021 17957613 ~ 18008671 (+)
G64792 NA non-coding downstream 14888 18266239 ~ 18329102 (+)
G64794 NA non-coding downstream 55554 18306905 ~ 18384819 (+)
G64797 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 non-coding downstream 83165 18334516 ~ 18355513 (+)
G64799 NA non-coding downstream 93601 18344952 ~ 18345563 (+)
G64803 NA non-coding downstream 111486 18362837 ~ 18438856 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 495780 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1327497 16833290 ~ 16888195 (+)
G64449 NA other upstream 1339751 16873087 ~ 16875941 (+)
G64431 NA other upstream 1462132 16753043 ~ 16753560 (+)
G64289 NA other upstream 1773243 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 304777 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 971858 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1025451 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1028941 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1529312 19780663 ~ 19794325 (+)

Expression


Co-expression Network