LOC111192974 (tvp23b,LOC108437154,LOC105899270)


Basic Information

Item Value
gene id LOC111192974
gene name tvp23b,LOC108437154,LOC105899270
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17782752 ~ 17797809 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671442.1
TCCTTCAGGCGGAACTGCGGGCACCCTCTGTTTACATACACGTCACTAGGAAGTTTATCCGAGATGTTGAGACAGgATTCGCAGGGTGACGTCCCTCTGTTTGATGAGGATGAAAATGCAGCCAGTAAGAACAGatcaaaaatacaacaccCTCTGGCCACGTTCTTCCACCTGTTTTTTCGCGTGAGCGCTGTCCTCGTCTACCTGCTGTGTGAGAttatcagcagcagctttatCGCCTGTATGGTAACAATTATCCTCCTGCTGTCCTGCGACTTCTGGACAGTAAAGAATGTAACCGGGCGGCTGCTGGTGGGACTGAGGTGGTGGAATCAGGTGGATGAGAACGGGAGGAGCCACTGGGTGTTCGAGTCCAGAAAAGAATCCAGCAGGAAGGTGGTCTCCAGTTCAGAGTCACGGATCTTCTGGCTGGGTCTGATCGTGTGTCCGATCCTCTGGGTTCTCTTCGTGTTTTCTACTCTCTTCTCCTTTAAGATTAAGTGGCTGgcggTGGTGATTATGGGACTTGTGTTACAGTGGGCTAACCTGTACGGATATGTTCGGTGTAAAGTTGGAGCTGGGACCAATCTGAGGAACATGGCGACCAACTACCTCGGCTTTCAGCTCtttaaacaggCAATGATCAAATCCCAAGGACCCTGATGTGCCCAGAGATGAGTGACAGGGCTGATGCTGCTGATATAGCTATAAATTATTTGGTTTTCTTGATGTCTAGAGGGACACTTAACTCCTTACCTTAA

Function

symbol description
tvp23b Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in lens and solid lens vesicle. Orthologous to human TVP23B (trans-golgi network vesicle protein 23 homolog B).

NR:

description
Golgi apparatus membrane protein TVP23 homolog B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671442.1 True 761 mRNA 0.49 7 17782752 17797809

Neighbor

gene id symbol gene type direction distance location
stk19 stk19,LOC106601743,LOC106601674 coding downstream 51053 17721129 ~ 17731699 (-)
cep112 cep112 coding downstream 475676 17103295 ~ 17307076 (-)
LOC103042974 LOC108437161 coding downstream 685927 17045514 ~ 17096825 (-)
LOC103039070 NA coding downstream 837087 16895580 ~ 16945665 (-)
LOC111192875 LOC108437882 coding downstream 1075677 16696081 ~ 16707075 (-)
LOC111192966 NA coding upstream 9265 17807074 ~ 17817082 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding upstream 42370 17840179 ~ 17855162 (-)
hid1 hid1,LOC107710705,LOC107698779 coding upstream 86811 17884620 ~ 17920811 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding upstream 555524 18353333 ~ 18356495 (-)
LOC103034879 usp36,LOC107717487 coding upstream 691843 18489652 ~ 18536743 (-)
G64835 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 non-coding downstream 62841 17690229 ~ 17719911 (-)
G64841 rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606 non-coding downstream 67310 17707996 ~ 17715442 (-)
G64692 NA non-coding downstream 104087 17677102 ~ 17678665 (-)
G64688 NA non-coding downstream 112335 17606894 ~ 17670417 (-)
G64694 NA non-coding downstream 140523 17640160 ~ 17642229 (-)
G64867 NA non-coding upstream 13367 17811176 ~ 17953544 (-)
G64882 NA non-coding upstream 82641 17880450 ~ 17882420 (-)
G64898 NA non-coding upstream 179738 17977547 ~ 17978089 (-)
G64902 NA non-coding upstream 201747 17999556 ~ 17999808 (-)
G64904 NA non-coding upstream 226265 18024074 ~ 18024657 (-)
LOC103043390 NA other downstream 93440 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 118191 17535296 ~ 17664561 (-)
G64492 NA other downstream 894849 16882335 ~ 16887903 (-)
G64387 NA other downstream 1197105 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 1914957 15671306 ~ 15867795 (-)
G64886 NA other upstream 130698 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 827066 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 840498 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 1100376 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1482493 19280302 ~ 19284032 (-)

Expression


Co-expression Network