LOC111192978


Basic Information

Item Value
gene id LOC111192978
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18196755 ~ 18213076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671449.1
AGATGACGCGTCAGTACAGCGGGCAGAATTCAAACTGTGCTTCGTGTTTACGTTTgacagctaacagctaacttaACATTCAGCGCTtttacagataaaaacagatacAATACCGATAATTaacagcattattattagtttatacaGCTTATTCTCCTCTATCTGAACCTCCGGATCTTTATCAGCGGGTTTTTCTCCCTCCGGACTGTATTATGGATCCGACACTCGACCAGAATCTGGACCTGTATTTCTATAAGAACCGGTTAGCCACCTACTCCGGCTGGCCTTTCGATGAGGAATGTGCCTGTACTTCTGAAAACATGGCCCAGGCTGGATTTATCCACACTCCCTCTGATAACAGTCCAGACGTGGTCCAGTGCTTCTTCTGCTGTAAGGAGCTGGAGGGCTGGGAGCCTCAGGACGACCCGGTGAAGGAGCACAGGTCTCACTCTCCAGCCTGTAACTTCATCCTGCTGAAGAAAGCAGTGGAGGAGCTGACGGTGGAGGAGTTCCTCaagctgcagaaagagagacagaaatttCACATCaaaaagacCTGCAACCAGGCCATTGAGAAATTTGAAGTTTCTGCAAAGTCCAGAAGAGGCGATATCGCCAGAATGGCCATGGAAGGATAAATAGACTTGGAGTCTGGAGTGTTTAATACTTTATCTGTTATCTTGTTGTTGGTTTtctgtgttgtatgtgtgtgttgtgttgataaagttgcaaaaaaagttgcaaaagCCACTTAAAAtgtgtgagtttctttgattttaccaaattgaagaaGATGCATGATCACACGCCCTCAAATTCTTCATGGATCTGTATATCTGATATTATTACTAGTTATATActacaaatatacagctctggaagaaattaagagagcatttcaaaataacaaaagaggctgaaataataagaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaataatcaatatttggtggaataaccctgtttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcttcaatttggtaaaattaaagaaactcatcatttttaattggtctcttgtttttttaaagttaagatTTGATGTTGTATAAACTTGTATCTTATTGTGCGTTATCTTTACTCGTGTTATCTTGTCGTATATATGGTTATATATATGTTGTGTAAACAGTCTCTCCTGTTGTCCTGTTGAAGCTCAGCGTCCGCTCAGTAAACTCTGTCCTTGAATGTTTGATTTAATAAAGGAAGAAATGAATTATG

Function

GO: NA

KEGG:

id description
K08731 BIRC5; baculoviral IAP repeat-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671449.1 True 1425 mRNA 0.39 4 18196755 18213076

Neighbor

gene id symbol gene type direction distance location
LOC107197388 NA coding upstream 3585 18176227 ~ 18193170 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding upstream 24518 18161072 ~ 18172237 (+)
LOC103040205 NA coding upstream 64745 17984965 ~ 18132010 (+)
LOC111192979 NA coding upstream 266906 17924346 ~ 17929849 (+)
otop2 otop2 coding upstream 317483 17860217 ~ 17879272 (+)
LOC111192973 NA coding downstream 2616 18215692 ~ 18251351 (+)
LOC103027278 NA coding downstream 418336 18631412 ~ 18634243 (+)
LOC111192977 NA coding downstream 439052 18652128 ~ 18654689 (+)
LOC111192972 NA coding downstream 444200 18657276 ~ 18669434 (+)
LOC107197347 NA coding downstream 456356 18669432 ~ 18683116 (+)
G64776 NA non-coding upstream 72856 18114974 ~ 18123899 (+)
G64754 NA non-coding upstream 135425 17972579 ~ 18061330 (+)
G64770 NA non-coding upstream 145512 18050049 ~ 18051243 (+)
G64766 NA non-coding upstream 168000 18028086 ~ 18028755 (+)
G64753 NA non-coding upstream 188084 17957613 ~ 18008671 (+)
G64792 NA non-coding downstream 53163 18266239 ~ 18329102 (+)
G64794 NA non-coding downstream 93829 18306905 ~ 18384819 (+)
G64797 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 non-coding downstream 121440 18334516 ~ 18355513 (+)
G64799 NA non-coding downstream 131876 18344952 ~ 18345563 (+)
G64803 NA non-coding downstream 149761 18362837 ~ 18438856 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 476843 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1308560 16833290 ~ 16888195 (+)
G64449 NA other upstream 1320814 16873087 ~ 16875941 (+)
G64431 NA other upstream 1443195 16753043 ~ 16753560 (+)
G64289 NA other upstream 1754306 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 343052 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1010133 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1063726 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1067216 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1567587 19780663 ~ 19794325 (+)

Expression


Co-expression Network