LOC103043906 (LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444)


Basic Information

Item Value
gene id LOC103043906
gene name LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19268422 ~ 19271847 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671456.1
ATGCGACCACCCGCCGCCATGCTGCAGTCACTCCATAAACAGAGCGGCTTTCCCAAAATAACCCAGCCGAGGATATAAAGAGACGCCAAATCCTGCGCAGCCAGAACAGCACAAAGACACGGGAGAGGACGATAAAAACCCAACCAGGACCAGCGAGGAGAGAACAGTCCAGAGGAAGAGCTCATTACGAACAGTTTTTACAGAAACAACGCTGGACTGGTCTCGGGACCGATAGGGAGCTAAGCGAGCGCAAAGGATTACCGTTTCCGGATTTTCCTTTAGGACAGTTTTGGGATTTCTTCTGCCTCCTCCTGCCTCCGAGCAGAAGGGGGGGCTGAAGAGCGACGGCAGGAATGAAGTATAGCTACCAGTATCCGGTGTCCCAGTACACGCGCCCCAGTACCTACACCCCAGCGACGCACTACACGCCCAGCCTCTACTCGCACAAGCAGTACTCCACTAGTTCCTACTCGCCCAGCAGCTACAGCTCCGTAAAGTACACCCCCACCTACTACACCCCCACCTTCCTACACCCCCGCCTACAAAACCACCTCCACCTACACCCCCATCTCCTCCAAACCCTCCCGCAGAGGCAGCGCCGCTCCTGCCCAGCGAGCGCCAACCGTACCCGTCAAACCAGCCAAAGCTGTTCGCTTCACCAACGACGTTCTGTTCCAGGACCACATCCGGCACGGAGAGCTGGAACTGATCGGCCGCTTCATGAGAGCGAGGAAAGTGAGACTGGACACTATTTTTCATTCTGgcgtctgttagctgatgtatcacagCTGGGGATCCGGGGATCCGTCTCACATCTGCCAAACAGAGGCATGGCGGCTCTTCACGAAGCCGTTCTCTCAGGAAACCTGGAGTGTGTAAAGCTTCTGATAAAGTACGGAGCTGATGTTCACCAGCGGGACGAGGACGGCTGGACTCCCCTTCACATGGCCTGCAGTGATGGATATCCTGAGATAGCACGGTATCTCCTCTCTCTGGGCGCGAGTGCAGAGGCTGAGAATGAGAATGGAGAGAAACCAGCTGACCTTATCGACCCCAACTGCCGAGAGCTGAGCAAGCTGTTTGAAGTGGGCTGTGTTTAAAGAACCGGATTCAGTCTCTGCCTGAGTTAGAGGACGGGTCCACGCTGAAGCTGCTGAACTGTTTATTCTGGTCAACAGAGGTTTTGGTACAAATATGTCCAATTGGACTCCAGCTCCAGCTGTCTgaatgtttctgtgtgtttgtgaaagCAGATGCTCTCGCTTTTAATTTtctactgttgttttgtttttttaggggGGCTTTAGTTTAGCTAGGTCCCAGACAGTTTCATCCATGGGTTCCATGTCGGCTCCACATATGGGCCATTTTTCCACGGTGGGGTCAGAGTGGACCGGTTGGACCAGTGCGGTTTCTTCTTCCATTTGCTGTAATGGCAAATCAGAACCGAAAAGTGCACCTCGTCTCGTAATAATTATGATTTATGATTATGCCCTGATTTTGACAGCTTCAGATCTCTACCAGCAGCCTACCAGGGTGTTAGCAAGACCCAACTAGCCAAGCAGTGGATCCCTACATCTTTAGTCCTTCCCACTGAACAGATCTGGGGTCCAAAGTGTGGCTAAGGTCTGTGTGGAAAATCCACTGCTCTAGTTTCCCTCTGCGCTCAGAACCGCTCGGCCCGGCAGGGGAACAACAGCCACCCGGGTCAGTGATTAACTCTACTTTGGTCAGTGATGGGACCAGTATTGGTTAAACCTGGGCGTGGTCTGGGACGCTGCACGCTGTGTGAGATGGGCTTAGATGGGTTATGGAAGCGCAACTGGTTCCAGTAACACCACAATACAAACCCACTCATGCTGGTACTTTACCAGAACACAGAGGAGTCCGTGTGCACCGGCCGTCCTCtaaatatactgtttatatattcCTGTAAGCTACATCTTTGCTTGCCTCCTACTGCTAACCTCCCCGAGCTCCAGTTACCCGGCGCTGAAAGCTCCCTGACACCCAGTAACGTCATCAGGAGCACAAATAGACCGGCGGCTCTAAATCGGACCTGCAGCTGCTGGTGCTGATCTGTGTATTATATCTAAACGTGCTGCAGATCAGGAGCtctgagaaacactgaggatCAGTTCAGGTTCTTCAGGGCAGGATCAGTTCAGGGTCTCTGGTTGGAGATGTGATGATGCCGtatgtatttgagtaaaatgttgcTTCTGCTGTGCTAAAAATTAgcacagtatatatttatatactcgCCGACTCCTGTCTCCTATAAAAgtcttatgttttttcttttttactgttttcataaataaaggtgttttttatAACGTC

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 27-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671456.1 True 2343 mRNA 0.51 4 19268422 19271847

Neighbor

gene id symbol gene type direction distance location
LOC111192912 NA coding upstream 89835 19177002 ~ 19178587 (+)
LOC111192965 LOC108435873 coding upstream 249154 18990517 ~ 19019268 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding upstream 561876 18687257 ~ 18706546 (+)
LOC107197347 NA coding upstream 585306 18669432 ~ 18683116 (+)
LOC111192972 NA coding upstream 598988 18657276 ~ 18669434 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 14988 19286835 ~ 19305457 (+)
cd36 NA coding downstream 96667 19368514 ~ 19399220 (+)
LOC103040257 kdm7a coding downstream 298139 19569986 ~ 19598049 (+)
kmt2e kmt2e coding downstream 343763 19615610 ~ 19660520 (+)
orc5 orc5 coding downstream 443941 19715788 ~ 19728171 (+)
G65150 NA non-coding upstream 10839 19253483 ~ 19257583 (+)
LOC111192982 NA non-coding upstream 15973 19250226 ~ 19252449 (+)
G65145 NA non-coding upstream 16007 19247531 ~ 19252415 (+)
G65144 NA non-coding upstream 105504 19162569 ~ 19162918 (+)
G65122 NA non-coding upstream 235671 18945326 ~ 19032751 (+)
G65178 NA non-coding downstream 322064 19593911 ~ 19594223 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding downstream 329041 19600888 ~ 19601638 (+)
G65182 NA non-coding downstream 337618 19609465 ~ 19610521 (+)
G65183 NA non-coding downstream 339065 19610912 ~ 19611872 (+)
G65301 NA non-coding downstream 458630 19730477 ~ 19730879 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 644923 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1548510 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 2380227 16833290 ~ 16888195 (+)
G64449 NA other upstream 2392481 16873087 ~ 16875941 (+)
G64431 NA other upstream 2514862 16753043 ~ 16753560 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 4955 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 8445 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 508816 19780663 ~ 19794325 (+)
G65565 NA other downstream 1685288 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1752328 21024175 ~ 21024574 (+)

Expression


Co-expression Network