sema3c (sema3c,LOC107680038,LOC107694195,LOC106576426)


Basic Information

Item Value
gene id sema3c
gene name sema3c,LOC107680038,LOC107694195,LOC106576426
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19409298 ~ 19515383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671463.1
tctctctctctctctctctcttctctctctctctctctctctctctctctctctcactttctcggTGTGGATTTACCAGCAGCTGGGTGTCAGTAGGGCTGAATGAGGAGGACTGTAGGGGTATTGGACAGCACTGAAAGTGGACGGGACTGAAGGTGTGCTGGTGTAGTTTTGTATCCTCACTGTTGGAGTGATGGAGGGGTTGGTGAGGTCTGTGATGTTGAGGCTGGTGATCcttcctctcctcttcttcACCACCTTCATCTCCGCTATCTCTCCACCACAGCCCAGAGTCTTCCTCCCCTTTCAGGagcTGCAGACGACGCAGGCGTTCGAGTTCTACACTCTGTCGGAGAAGGCGATGGACTACAGGATCCTTTTTATGGATGAGGATCAGGACCGGATGTACGTGGGCTGTAAAGATCATGTTCTCTCCATGGATATCAATAACATCACGCAGGGAACCCTGAAGATTTTCTGGCCGGCATCCAACACTAAGATTGAGGAGTGTCAGATGGCGGGTAAAGATCCCACAcacgGCTGTGGAAACTTCCTGCGGGTGATTCAGCCCTATAACAGAACTCATCTGTTCATCTGTGGCAGCGGCGCCTACAGTCCAGTGTGTGCGTACATTAACCGCGGCCGGAGACCCGAGgAGAAAGTGTTTAATATAGCCTCTCGGGGAGAGTCGGGGAAAGGTCGCTGCTCATTTAGTCCACGGGTCAACACCGTCTCCGTCATGCTcaATCAGGAGCTGTTCTCTGGAATGTACATCGACTTTATGGGGACGGACGCGGCTATCTTTAGGAGTCTGACCAGCAGGAACGCAGTGAGGACCGACCAGCACAACTCCAAATGGCTGAGCGAACCCGTTTTTATTGATGCCCACTTAATCCCTGATGGATCGGATCCGAACGATGCCAAGCTCTACTTCTTCTTCCGAGAGAGACTGACGGATAACAGTGGCAACACCAAGAACATCCACACCATGGTGGCACGAGTGTGTCCGAATGATACAGGTGGTCAGCGCAGTCTGGTGAATAAATGGACCACGTTTCTGAAAGCCCGGATGGTGTGTTCTGTTCTGGAAGAAGACGGCACTGAAACACACTTTGATGAGCTTGaaagtgtgtttttgctgGAGACGGACAATCCTAAGGGTCTCCTGCTGTTTGGAATCTTCACCTCCACCAGCTCTGTGTTTAAGGGTtcggcagtgtgtgtgtacaacaTGGCCGACATCCTGACGGTGTTTAATGGGCCGTTTGCTCATAGAGAGGGTCCAAATTTCCAGTGGGTGGCATTTCAGGGGCGCATCCCGTACCCTCGCCCTGGAACGtgtcCGGGCGGGGCGTTCACTCCTCATATCCGCAGCACTAAGGAGTTTCCGGATGATGTGGTGACGTTTATGCGGAATCACCCGCTGATGTTTAACCCGATTTACCCGGTGGGCCGCAGACCACTGCTGGTCAGAACTCACGCTGAGTATAAATACACCTCCATCGTGGTGGATCAGGTGGCCGCGGCTGACGGGCTCTACCGGGTGCTCTTCCTCGGCACAGATAAAGGCACAGTGCAGAAGGTGGTGGTTCTGCCCACTAACCGTTCACTGGGAGATGACCTGATACTGGAGGAACTGGAGGTGTTTAAGAACCAGGCCCCCATCACCAACCTCAGGATCTCCTCCAAGAAGCAACAGCTATACGTCAGCTCGGAGTACGGCGTATCCCAGGTGTCTTTGCATCGCTGCAATGCGTACGGCACAGCGTGTGCCGACTGCTGCCTGGCACGGGATCCGTACTGCGCCTGGGACGGACTGAGCTGTTCCCGATTCTACCCCACCGGAAAGAGGAGAAGCAGAAGACAGGACATCATGCACGGAAATCCACTCACACAGTGCCGGGGCTTCAATCTTAAAGCCTACAGGAATGCAGTGGAGATGTCGCAGTACGGGATCAGGAATAACACCACGTTTCTGGAGTGTATTCCCAAATCACCCCAGGCCTCGGTCCGCTGGCTCATCCAGAGAGACAACGACCGCAGGAAAGAggtGAAGCTGAGTGACCGAGTGGTGGCGACTGACCACGGTCTGCTGATCCGTTCGGTGCAGTCGTCTGATCAGGGTCTGTATTACTGTCTGGCCACGGAGAACGGCTTCAAGCGCACTTTAGCTAAAATCCGTCTGCGCGTGCTGGGCGAGGCGGTGGTCAGCGCTCTCAGCGATAAGCAGCGGTCATCCTGGGGGTGGGGCCTGAGCCCCAAGGCCCTGGCGTCGGCCTTCAGCCCGGCGGAGACGCTGGCCATGCAGCAGTACTGCAAAGAGCGCAAGCAGCTCCAGACCTTCCAGGGTCCACTGAGGGGCGACCTGGCCAAACTCAAACCCCTGCTGGATCACAACAAGAGCCGGAACCGCCGGAACCACTGACCCCAGGATAAGAGGAATGGACTGGAGGAGACGAGGAGATTTTTTTGGACAGAGCTAGAGATGTGGACTGAGGAGAGGAACTGAGGATGGGGAAAAAGGAgaggaaagaaaaggagaggagaagaaaaggaagGAGCGCTGTGGATGGAGGAAAAGTAGGCAGGGCTTTAAAAGCATAGTTTGGCCTAAACAAAATCAAATGTACACCGTTC

Function

symbol description
sema3c Enables neuropilin binding activity. Acts upstream of or within enteric nervous system development. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in caudal tuberculum and otic vesicle. Orthologous to human SEMA3C (semaphorin 3C).

NR:

description
PREDICTED: semaphorin-3C

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671463.1 True 2637 mRNA 0.54 18 19409298 19515383

Neighbor

gene id symbol gene type direction distance location
LOC103035518 nptx1l,LOC108435874 coding downstream 287838 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 690668 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 819228 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 834129 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 858325 18538903 ~ 18550973 (-)
lhfpl3 lhfpl3 coding upstream 150176 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 217372 19732755 ~ 19738419 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 538568 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 667711 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 686715 20202098 ~ 20205655 (-)
G65251 NA non-coding downstream 24879 19378714 ~ 19384419 (-)
G65232 NA non-coding downstream 103887 19302894 ~ 19305411 (-)
G65236 NA non-coding downstream 159136 19249186 ~ 19250162 (-)
G65222 NA non-coding downstream 160611 19139597 ~ 19248687 (-)
G65213 NA non-coding downstream 265188 19058448 ~ 19144110 (-)
G65271 kdm7a,LOC106573199 non-coding upstream 64744 19580127 ~ 19588458 (-)
G65273 NA non-coding upstream 76911 19592294 ~ 19593113 (-)
G65279 NA non-coding upstream 90907 19606290 ~ 19606501 (-)
G65276 NA non-coding upstream 94071 19609454 ~ 19610489 (-)
G65277 NA non-coding upstream 95552 19610935 ~ 19611878 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 38590 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 125266 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 385640 18898185 ~ 19023658 (-)
LOC111192976 NA other downstream 696778 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other downstream 758955 18638307 ~ 18650343 (-)
ndufb2 ndufb2 other upstream 84831 19600214 ~ 19605725 (-)
llph llph other upstream 279771 19795154 ~ 19799602 (-)
ost4 NA other upstream 2030035 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 2114575 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2775302 22290685 ~ 22291682 (-)

Expression


Co-expression Network