lin7a (lin7a)


Basic Information

Item Value
gene id lin7a
gene name lin7a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20155055 ~ 20173304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671483.1
ttgtctctctttctgtttctcaggTCTACCAGTACATGCATGAGACAATAACAGTGAATGGCTGTCCGGAGTACCAGGCTCGTGCCACAGCGAAAGCCACAGTGGCGGCCTTCGCGGCCAGCGAAGGTCACTCCCACCCGCGGGTGGTGGAGCTGCCGAAGACAGACGAAGGGCTGGGCTTTAACGTGATGGGCGGGAAAGAGCAAAACTCACCCATCTACATCTCCCGCATCATCCCCGGGGGCGTGGCCGAGCGACACGGTGGACTGAAGCGAGGAGACCAGCTCCTGTCTGTCAACGGTGTGAGTGTGGAGGGGGAGCACCATGAGAAGGCAGTAGAGCTTCTGAAAGCAGCAAAGGACAGCGTGAAGCTGGTGGTCCGCTACACGCCGAAGGTTCTGGAGGAGATGGAGGCTCGCTTTGAAAAGCTCCGCACAGCCCGCCGGcgccaacagcagcagctactgatgcagcagcaacagcagcagaaccTCAACGCTCAGCAGAACCACATGTCGTAGGTTGttccagaagaagaagaaatagagGATCGGGAGCGAGCTCTGCTAGAACTCTAATCCGGCGACCTGCAGCCATCCAGCAGACGCGAAAGGAGGGCCTGGCTGTTTTTCAACGAACACCACCCCTCGTTCAGTGTACTACCTAGCTTTACACGGCCCACCAACCTCTATGATCTGTCCTGGAACGTTAACTTCGGTGCTTGGGAATCGAATGGCTGCAGAAAAGACgataagaagagagagagaaagcagttgttttaatactttttcgTTGTTGATCTTTTAGTTGTCCGCCTCAACCAGTTGCAAGTTGTGACCCTCTCCAAAGAAAGTCCCGTTCTCGTAGTTTGTGGTTCCGTATTTACTTGTAATTCTGACGCGTTCTGAAGCTGAATGTGTTGACTGGTCTTTTTACTCCCTTTTGTTCGTTTGTTCGGTTTCTCCACAGCTTTGTACAATAACCTCTCGACGGATTCTTCTGGTGCTTTGTGTCCGTGTGAAAGAAAACTCGCTCTTTTTCAGTGTCAAATGTGTCCTCGATCGGATAAAGTGAGGTATTTTATACCATATTGTAGCAAGGAATATTTTGTATAAACAGGTAGATTTAGCAATAACACACTTTTGttggttttgcattgtcatTGTCAAATTTTTGGAGAACAGTTAAAGGAATATTACGTACCTATATGGAAGATTATAACAGCAGTGCGCTTTGAAGGGCCGCTTGTCTAGAAATGCTAACTAGAGCTAGCAAGCACGCTTAACAGCAGAGAGGAGCTAGCAGAAAGGACAGCACATCTAAATCTAGCTTTGCTAGATTTCAGTTGTTGTTAGCCATGTTAGCATTTTCTTAAGCTAACAGTAAGAAGAGTGAAAAAAGCAGTAGCTAGCCATCTAGTTATAAATGCTAATGTCTATCTCCTGTGCTCTGCtatatttaatttgttgtttgccatgttaaaaatatattcaaacaAAAAGAGAGCAAATGCTAGTTACACTACTTTTGCGTGATTTAATAAGTTGTTAGCCATATTAGCAATTTTGACCAAGCTAACACAAAGAGGAACAAAGGACAGCAGCTACAATGCTGGTAATGTatgtgctagctaacattaatttCACGTGTTGTTAgccatgctaacatttttagaGGTATCAGAAAGCAGCGCCAAAGCTAGTTACACTAATATTGGTAGATTTTAATTGTTGTTATCCATGTTAGCATTTTAATCATTAAAGGAGATTAAATGGCTTTACCTAGCATGCTAGATATATATGTGAGAGCTAATGTCTCGCTGCTGTGCTCCAATAGATTTCACTTGCTGTTATCtatgttaacattttaaaccaaGCTAACACAAAGAAGAACAGAGGGCAGTAGCTAGAATATTAGCTGTGTACGTGATAGCTGATGGATGTTAGCGAAGCTAgtagaaaaaaacatggtagCAGCTAGGCGTTATTTATGTAGGTGCTAGCTAACATCTAGCTCTCTTGCTCTGTCATATTTCACTTGTTGTTAGCCATGTTATCATTTTTAGCCAAGCTGTTAAATTCTTCCATTTGCACAGAATGTCCTTAATGTATAAACTAGCTACAACATCAGCTAATCAGCTGAAGCGATTAGATGTACTGGTGTAAAAAAGTTAATTACATtgtataaacattgttttttgcaGTTCTGAGGCAGTTTTACACAACAAaccaataaatataataaaaaga

Function

symbol description
lin7a Predicted to enable L27 domain binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in myotome and nervous system. Orthologous to human LIN7A (lin-7 homolog A, crumbs cell polarity complex component).

NR:

description
PREDICTED: protein lin-7 homolog A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671483.1 True 2249 mRNA 0.43 4 20155055 20173304

Neighbor

gene id symbol gene type direction distance location
ppfia2 ppfia2 coding upstream 101007 19839195 ~ 20054048 (+)
golgb1 NA coding upstream 375592 19749310 ~ 19779463 (+)
orc5 orc5 coding upstream 426884 19715788 ~ 19728171 (+)
kmt2e kmt2e coding upstream 494535 19615610 ~ 19660520 (+)
LOC103040257 kdm7a coding upstream 557006 19569986 ~ 19598049 (+)
rps16 rps16,LOC103382554 coding downstream 89276 20262580 ~ 20266197 (+)
ppp1r12a ppp1r12a coding downstream 126398 20299702 ~ 20397967 (+)
pawr LOC108434155,LOC108434154 coding downstream 244208 20417512 ~ 20497661 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding downstream 420362 20593666 ~ 20595301 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 1237545 21410849 ~ 21438210 (+)
G65404 NA non-coding upstream 3498 20151233 ~ 20151557 (+)
G65311 NA non-coding upstream 348455 19804626 ~ 19806600 (+)
G65310 NA non-coding upstream 349953 19803175 ~ 19805102 (+)
G65306 NA non-coding upstream 407864 19743884 ~ 19747191 (+)
G65301 NA non-coding upstream 424176 19730477 ~ 19730879 (+)
G65403 NA non-coding downstream 66 20173370 ~ 20174743 (+)
G65427 NA non-coding downstream 48796 20222100 ~ 20222899 (+)
G65435 NA non-coding downstream 60682 20233986 ~ 20234618 (+)
G65442 NA non-coding downstream 155575 20328879 ~ 20329924 (+)
G65471 NA non-coding downstream 327470 20500774 ~ 20501708 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 360730 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 814176 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 875538 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 876984 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1531556 18556128 ~ 18623499 (+)
G65565 NA other downstream 783831 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 850871 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1267105 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1456483 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 2766251 22939555 ~ 22949199 (+)

Expression


Co-expression Network