pawr (LOC108434155,LOC108434154)


Basic Information

Item Value
gene id pawr
gene name LOC108434155,LOC108434154
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20417512 ~ 20497661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671492.1
CGTAAAGTGACCGGGAACGCGCGCGcgctcgagagagagagagcgagagagacttACTTGGGGAAAGTGAGAGACCGGACTGGTTTaccgtgtgtgtgtctgcgggACGGAGAGCAGGCTTCCCTTTTCTGCTCCTGTTACTGTGTGGAGGAATGTGGCGTTCCTGATCCAGAGAGGAAGGTGAAGTCCgtcctgcttaatttttttcgGAGCTGAAAACAAAGCAGAAGCGAAACCTTCTGAGCCAGGAAAAGCCAGCAAAAAGAACCGGTCCGAAAGAGGGACGAGCATGGCATCCGGCGGGTTCAAAGCCAATGCTGCCACGGATTTCTTGGAGGAGTGGAAGGCTAAGCGAGAGAAGATGAGGGCCAAGATGCTGGGGGACATTGCCGCGGCGACCGGGCAGTGCCCACCTTCCGGCCTGCAGGTCACGGGCAGCACCGGCACTAAACCCCCAGAACCGAGCAACAACGGAAACTCTGCGGCCGTGAACTGCGTGGCCTATCCGGTTGTTCGgtcttcctcctcttctgctCTGAGGAGGCCCGAGGATGATCCCAACTCCAGGCCAGCCGAGACGCCTATTAAAAAGGAGCCCAGCCCCCCTGCTGCCACCGCCTGCCCGGACAGCGATAAGGAGAGCCCCCCGCACGGGAAAGGCAAGGAGAAGAAAAGCTCTGGACCCAGTGCCAGAAAGGGAAAAGGTCAAATAGAGAAACGGAAGCTGCGGGAAAAGAGGAGGTCAACCGGGGTCGTCAGCATACCGTCAAATGAGagtttggacgagctggatgatgatgatggaggggagaaggagaggaaggggGAGGAAGCACTGACTCAGCACAACACTGTCCAGAACGAGTCCATGACCTCGGACCCCGCCGGACACTCAATACAGGACTCTCCAAGATCTGGCAGCGGCCGCCACAAGGGtgaGGATGATGCAGGAAACGGACATCGCCAAGGTTACAGTCGTCATGGACGGGACAGTTCAACACCTTCTGGACTGGAGAGGAGGATTGAGGAATTGGAGAAGgagctGTCTCTGGAGAGGCAGGAGAACACTCGGCTGCTGAAATCTTACCAGGATAAAGAGGAACTGATCGTTAAACTGAAGGAGGAGATTGACCTGCTAAACCGAGTAAGTTCATACAGCAGCCTATCAGCAGGGGGCGAGACTGAGCATGCACAATACATtcatgagtggaagcacaaagtagtaggtgtttctaataaagtggccagtttaaGGGATTAAGGGGTCTAACTCTGT

Function

NR:

description
PRKC apoptosis WT1 regulator protein-like isoform X2

GO:

id name namespace
GO:0043114 regulation of vascular permeability biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671492.1 True 1276 mRNA 0.55 6 20417512 20497661

Neighbor

gene id symbol gene type direction distance location
ppp1r12a ppp1r12a coding upstream 19545 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 151315 20262580 ~ 20266197 (+)
lin7a lin7a coding upstream 244208 20155055 ~ 20173304 (+)
ppfia2 ppfia2 coding upstream 363464 19839195 ~ 20054048 (+)
golgb1 NA coding upstream 638049 19749310 ~ 19779463 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding downstream 96005 20593666 ~ 20595301 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 913188 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 1217791 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 1407598 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 1435108 21932769 ~ 21956278 (+)
G65442 NA non-coding upstream 87588 20328879 ~ 20329924 (+)
G65435 NA non-coding upstream 182894 20233986 ~ 20234618 (+)
G65427 NA non-coding upstream 194613 20222100 ~ 20222899 (+)
G65403 NA non-coding upstream 242769 20173370 ~ 20174743 (+)
G65405 NA non-coding upstream 250060 20167147 ~ 20167452 (+)
G65471 NA non-coding downstream 3113 20500774 ~ 20501708 (+)
G65468 NA non-coding downstream 9046 20506707 ~ 20508447 (+)
G65476 NA non-coding downstream 53532 20551193 ~ 20554372 (+)
G65482 NA non-coding downstream 69702 20567363 ~ 20569105 (+)
G65494 NA non-coding downstream 247315 20744976 ~ 20750081 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 623187 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 1076633 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 1137995 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 1139441 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1794013 18556128 ~ 18623499 (+)
G65565 NA other downstream 459474 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 526514 21024175 ~ 21024574 (+)
agbl5 NA other downstream 942748 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1132126 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 2441894 22939555 ~ 22949199 (+)

Expression


Co-expression Network