msgn1


Basic Information

Item Value
gene id msgn1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21715452 ~ 21716948 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671519.1
GAGTGCTGGCCACATGTTTTCCCAAATGTTGTTGGTGCCTTACCAAACTAACattttagaacagtgtgaataaagTAGAACACCCACACGGGTATGATAATTCTTTAtataggtgttgctatgttgtgCATCTTTGTCATTTGTAAAATACAGGCTCTGCTGTAGAGAAAGCAGTAACGTGGCAAAACGAGCTAAAAGTAGTgtggtttactaaataaaaaacgtGACCCAGCCTTTCGCGGTTTACAGATAAAGAactaaactgcttaaatgtGCGGATTCCTTTCTCTGATAGGCGCGTAAGCGTTTGGTTCCTAACACCAGAGTTTATGGCCCCGCCGCTTCAGCTGCCGCTGCCCGGTGTGCCGTGTTACACACCTTCCCAGACATGAAAGACCCGCGCGGAGCGAGGCGCACTGACAGCTGCTCCGCGTCACCTTTACAGAAATACCGGCCAAAACACCTCGTTCCATTATTTTAACTCTTCGCCGCTCCGTGGCAGCATGACTCTCCAATCACTAGTATTAGTTTCCTTGCATTAAACTGTCAATGAGCGCCACATACACTTACAATCGCTCTCCCACAAAAGACAGtgtaattattttctttctcgAGCGCAGTACCAAGTCCTTTAGACTTTATTCACACTTTGGTGACAAAGAAGCTCGTGTCTTGGTCCCGGTTTGCCACTCCGACTCTCTTTGAACTCCCTAAAAAGCTGTGAACTCGTAAACTCCGCGCTGGTATAAAACCTCCTCGGTTGAGCTGCTGTTAAACACGAGCTCTGTGAGGACCAGCAGCAGCATGGCCAGCCTCGCTGAAGAACTCGCTCAGACGGACGCGGACCTCCTGACAGCCAAGATTCTGTCTCAGTGGGACTGGAGGGCTCTGGAGGCTCCGCAGCAGGCCTCGCTCCGGTTCCTGACCACCTCCTATTCCCCGGAGTCGTCCCCATATTCCAGCCGCTCCTCGCCGGAGCCGCAGGGCGTGGACGGAGAGCTGGTTTTCGCGGACTTTCCCTACGACAGTCCGCAGGGCCGGAGAGAACAAGGCGGCCAGCGGAAGGCAAACAAACCTAAGATGTCGAGCAGGAGGCGCATGAAGGCCAGCGAGAGGGAGAAGCTGCGGATGAGGAGTCTGGCGGAGGCTCTGCACCAGCTGAGGGATTACCTGCCCCCGGTCTACAGCCGCAAAGGACAGCCACTGACCAAGATCCAGACTCTGAAGTACACCATCGAGTACATAAAGGAGCTGTCGGACATTCTCAACCAAGACTGACTGTAGCTGATAGAACAGACTCCAAACATGAACGCTGCTGGCCACCGTTTGTACAGATTTTGAACTTTATTGACTGGCCTACTATTGTGTCTTAATTCTGGTGTATATAGTCCTTCTGGCACTTGATTACTGTGTCCATTTTTATTTGACCTAATcgcgtatgtgtgtgtttaatattgtgGGAATTATATGGCAGAATAAACATTTGGTTTCTTTTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007525 somatic muscle development biological_process
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0048342 paraxial mesodermal cell differentiation biological_process
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K09077 MSGN1; mesogenin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671519.1 True 1497 mRNA 0.50 1 21715452 21716948

Neighbor

gene id symbol gene type direction distance location
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 277242 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 1120151 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 1217791 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1317485 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 1449255 20262580 ~ 20266197 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 188311 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 215821 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 277162 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 387892 22104840 ~ 22161850 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding downstream 464255 22181203 ~ 22243904 (+)
G65781 NA non-coding upstream 5696 21705335 ~ 21709756 (+)
G65764 NA non-coding upstream 69773 21645416 ~ 21645679 (+)
G65759 NA non-coding upstream 100331 21614707 ~ 21615121 (+)
G65752 NA non-coding upstream 115609 21599489 ~ 21599843 (+)
G65744 NA non-coding upstream 126588 21588192 ~ 21588864 (+)
G65827 NA non-coding downstream 55505 21772453 ~ 21772747 (+)
G65830 NA non-coding downstream 73637 21790585 ~ 21790944 (+)
G65831 NA non-coding downstream 88364 21805312 ~ 21806045 (+)
G65832 NA non-coding downstream 89216 21806164 ~ 21807211 (+)
G65834 NA non-coding downstream 94098 21811046 ~ 21811619 (+)
gen1 gen1 other upstream 15 21629787 ~ 21715437 (+)
agbl5 NA other upstream 166290 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 690878 21024175 ~ 21024574 (+)
G65565 NA other upstream 757817 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1921127 19780663 ~ 19794325 (+)
ccdc167 NA other downstream 1222607 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1282422 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1414132 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1505566 23222514 ~ 23323361 (+)
G66296 NA other downstream 1727226 23444174 ~ 23444677 (+)

Expression


Co-expression Network