mrps10


Basic Information

Item Value
gene id mrps10
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21809285 ~ 21818148 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671520.1
AAACCCGACGGCTTGCTGCTCTTCTTCTGCTGCAGATATTGAGATACAATGGCGGCGTCCATGAGGACAGCGGGTGCAGCGCTCTGGTCAAAGGCAGTGCGGGATTTCGCCTCTAAGgctgctgctgctgctgctgctcggcCTGGTGTCCCCCCGCTCCCCCTTCAACACTCAGCGTTAACACGCAGCAGTGTTTATATGGTTCCTGCAGTCTTCCTTCACACAGGACGTGTTCGTCAGACCCAGACATCCCGTTCTATCACAGTCATTGAGGAGCCAGACACACTATTTCAGAAGCTTACTGTGTTGGTTAAAGGCCACGATAAGGCTGTTCTTGACAGTTATGAGTTCTTTGCCTCAATGACTGCAAAGGAACTTGGCTTAACTCTGGCAAAAGTaTCTGAACCTCCAAAGAATATAGAGAGACTTACGCTTCTTAAGTCTgtgcatatatttaaaaaacacagagtcCAGTATGAAATGAGAACACATTTCAGATGCATTGAGATATCCAAAGTAACAGGCTCTACTGCACAGGTGTATCTGGAGTACATTCAGCGCAACCTTCCAGAGGGAATGGCCATGGAGGTTACTAagACTGCTATTGAGAAAGTTCCAGAGCATATCCGGACACCCCTCTGGGGTGACCAAAGCCAGGCAGAGAAAACCAGCCAATAAGATTGTATTATGTCTTTATTGTGtctttttaaatgcatcttatTTAATTGATTGAAATGGTCAAGCATTGTGTGCATGAATTATTGTAAGTTTATATTGAATTGCTAAAATTACACTTGTTGTTCTTTAACATCTTGGTACAAGGGAAGTATGAAAGACAGAGCTTAACTTTAACAAAACTGTTAAGATGatgtcaataataaaaaattgtctGGCTCCTAA
>XM_022671521.1
AAAACCCGACGGCTTGCTGCTCTTCTTCTGCTGCAGATATTGAGATACAATGGCGGCGTCCATGAGGACAGCGGGTGCAGCGCTCTGGTCAAAGGCAGTGCGGGATTTCGCCTCTAAGgctgctgctgctgctgctgctcggcCTGGTGTCCCCCCGCTCCCCCTTCAACACTCAGCGTTAACACGCAGTGTTTATATGGTTCCTGCAGTCTTCCTTCACACAGGACGTGTTCGTCAGACCCAGACATCCCGTTCTATCACAGTCATTGAGGAGCCAGACACACTATTTCAGAAGCTTACTGTGTTGGTTAAAGGCCACGATAAGGCTGTTCTTGACAGTTATGAGTTCTTTGCCTCAATGACTGCAAAGGAACTTGGCTTAACTCTGGCAAAAGTaTCTGAACCTCCAAAGAATATAGAGAGACTTACGCTTCTTAAGTCTgtgcatatatttaaaaaacacagagtcCAGTATGAAATGAGAACACATTTCAGATGCATTGAGATATCCAAAGTAACAGGCTCTACTGCACAGGTGTATCTGGAGTACATTCAGCGCAACCTTCCAGAGGGAATGGCCATGGAGGTTACTAagACTGCTATTGAGAAAGTTCCAGAGCATATCCGGACACCCCTCTGGGGTGACCAAAGCCAGGCAGAGAAAACCAGCCAATAAGATTGTATTATGTCTTTATTGTGtctttttaaatgcatcttatTTAATTGATTGAAATGGTCAAGCATTGTGTGCATGAATTATTGTAAGTTTATATTGAATTGCTAAAATTACACTTGTTGTTCTTTAACATCTTGGTACAAGGGAAGTATGAAAGACAGAGCTTAACTTTAACAAAACTGTTAAGATGatgtcaataataaaaaattgtctGGCTCCTAA

Function

NR:

description
28S ribosomal protein S10, mitochondrial isoform X2

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671520.1 True 900 mRNA 0.44 7 21809285 21818147
XM_022671521.1 False 898 mRNA 0.43 7 21809285 21818148

Neighbor

gene id symbol gene type direction distance location
LOC103044186 NA coding downstream 422826 21374232 ~ 21386459 (-)
nav3 nav3 coding downstream 452777 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 998574 20522855 ~ 20810711 (-)
myf6 myf6 coding downstream 1603630 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 1619584 20183094 ~ 20189701 (-)
LOC103040407 NA coding upstream 5748 21823896 ~ 21877702 (-)
LOC103040999 LOC103040999 coding upstream 147829 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 171107 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 430739 22248887 ~ 22273098 (-)
LOC103043373 LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953 coding upstream 487057 22305205 ~ 22352523 (-)
G65828 NA non-coding downstream 36545 21772445 ~ 21772740 (-)
G65806 NA non-coding downstream 80029 21661338 ~ 21729256 (-)
G65815 NA non-coding downstream 92362 21714323 ~ 21716923 (-)
G65822 NA non-coding downstream 102626 21705473 ~ 21706659 (-)
LOC111192992 NA non-coding downstream 144843 21662893 ~ 21664442 (-)
G65925 NA non-coding upstream 11295 21829443 ~ 21830098 (-)
G65930 NA non-coding upstream 49007 21867155 ~ 21875310 (-)
G65935 NA non-coding upstream 81023 21899171 ~ 21928133 (-)
G65928 tmem19,LOC107687559,LOC107758202,LOC107719866,LOC107671498 non-coding upstream 87098 21905246 ~ 21910490 (-)
G65948 rab21,zgc:154045,LOC106609839,LOC107690748,LOC107687573 non-coding upstream 114676 21932824 ~ 21956269 (-)
G65803 gen1 other downstream 124457 21629958 ~ 21684828 (-)
ost4 NA other downstream 235086 21545418 ~ 21574199 (-)
llph llph other downstream 2009683 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2203560 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2438577 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 472537 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1235125 23053273 ~ 23160179 (-)
G66619 NA other upstream 2689686 24507834 ~ 24508281 (-)
G66642 NA other upstream 2841876 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3698367 25516515 ~ 25530980 (-)

Expression


Co-expression Network