LOC103042836


Basic Information

Item Value
gene id LOC103042836
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22104840 ~ 22161850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671526.1
AAGCAGCCTGTTGCCTTTAGTCCAGAGAAAGTTTTCTTTTTCGGGCACTGAACAGCAGAGGGAAGCGAAaagctaaaacattttttatttcagtcgaTATATGAATGAAACATCTGAATCTGGGTggtaaaaaaacatgcattgcCCTGTTAGAGAGGCTTCCATTAGTGCTTTACTCGGACACCCGGATTTGAACTTAAGACTCCGCGGCAAGACTGCACTGATTGCGGATATCCGTTAGAGACTGAGTGGTTTACTTGCACGTACTGCTGTTTGTTCTTGGCTGATGagggtgagagagtgagagacaggaCTGAGGGCCCccacacaaacccacacacactcaccactaCTGGACTTTTAATGGACTAATATATCCACCGCATGGGGATCCTACACTTTCACTCATCTCCAAAACCTTTGGATTATGTTTTTAAGAGCCTCTTTaaattgaatttttatttattaacaaagataatttaaaaatcatcaaaatgctgaaatctaaagcTGTTTGGGTAGCCGTTTGGGTAGCAGGTGAAATTCTGAGTGTGATTTTAACAGAGCCATGTAGCATCAACGTTACCCAGAGCATAGCAATGACAGACTCTATACAATTTACCCTGGAGACCTCAGATGTCGCTTGCCTCTTCAGAGTAGCAGTCAGGGACAGTCCTGAAGACCCAACAGACTGTGAGAATGACCAGGAACACACACAAGCTGCTCACTGCAAAATTGGGAATTTGGATCCTGGAACAAGGTACCATCTGACTGTGCTATCAAAGACGGATGGGAGAGAACAGAACATATCCTTAACAACCAGACCTTCTGCTGTGCTTGGAGTCTCTGTGTCTAGAGATGTGGACACCCTGGAATTTTCGTGGCAACCTGGCCCAGGGACAACAGAGCAGTTTCAAATTCTGCTTCAGGATAGCAGTGGTCTGAACTCTACCTGGAATGTCATATTGGCCAACACCAGCACCTCCTACAAAATAAATGGCCTGATTCCTGGACATCTCTACAACTGTACCATCACCACAGAGTCATCACAGTTACAGAACTCTGTGACCATACAAGCACGAACAGTGCCTAGCCCAGTGTCTAATCTACGACTTGACAATAATGGGAGTCAGACAAGCCTTAAAGTCTCCTGGAATCTGGCTCCTGGTGATGTGGACAGTTACCTGGTCGTTTTATCTTCTGAGGCTGTTTCGCAAGAGAAAACCTCAGACAGCACACAAGCTTTTTTTGACTATCTGAGCCCTGGCCACACCTACCAAGTCTCAGTCTACACTAGGAGTGCTGACCTAACCAACCACATCAATGTGACAGGCAGCACCGCTCCAGGTGAAGTTTCCCAGATAAAGATGGAGAATGTCGCTGAGGAAAACTCACTGAAGATGAGCTGGATGCCCCCTGTTGGACAGTGGGAGCACTACCGTGTTTTACTATTCAATGGCAGTGAGACACTGGTTAATGAAACTATGGACAAATCTGCAAAAGAGTTCAACTTCTCCAGACTAAATCTGCAGCCAGGCAGAGAGTACAAGGCAGCAGTGAGTGTGGAGAGCAGGGGCCAGGCCAGTACCGTCTACTGCCTAGGACGAACAGtTCCACTACCTGTTTCACAACTCCATATCCGTCAATCAGATGAGACCTGTGTCAGTGCTCTATGGAGCCACAATCCCAATCCATCATTCAGGGATGGGTACACTGTGGAGCTCTACTATGGGGACAGCACACATGCCATTGAAACTCGCCGCTTAGACCCTAATATGAGAGAATGCACCTTTAATACCCTTACACCTGGCTGCCTCTACATCATTAAAGTAATGACCACCAGTGGAAACCTCAGCAGCTCTGCTAATGTCACAGGAATGACATTGCCTATGGAAGTGACACACCTGAAGCTTAGCAACACGGGAACTGTTGATTCTCTCAGTGCGACCTGGGAGAGACCTGAAGGAAACTTGGACTCTTATCAGATCTTACTTCTGAGACACAAAGAGGTCATCTACAACATGAGCCTTCCAGCCAATGCCACCTCCGTTCACCTGCCCTCTCTTACTGCTGGAGCTTCCTACAGGCTTTTAGTTACGACTGTCAGAGAAGAACAGGTCTCGAAGCAGGCTGAAGCAGAATGCCGCACAGagcCTGCAGCTGTTGCAGCGGTAATGGTCAGTAATAATGGACGCTCAGACTTCCTCAGTGTCTCGTGGAAAGCTGCAGCTGGAGAAGTGGACAATTACCAGGTGAAGCTGAAAGACAATGAACGCACGGTGCACATGCTAACTATTACAAACGTCAGCTCTGAATTCAGCAGCCTGGTACCTGGACGACTTTACAACATATTCATCATCACCTGCAGTGGCAGTAACGAAAACCTCACTGCAGTGCAAGCAAGAACCCaacCATCTGCTGTGCAGAACCCCACTGCTATCCACTTAGCCCAAGAAGATGTTCTAAAGGTGTACTGGAACCATGCAGCTGGGGACTACGACCATTACAGTGTGTCAATCCTGCACAAAGACACCATCCTGAGGAACCAAACAGTGGACAGGCACcaaaatgagtgtgtgtttagtgatCTTGTTCCCGGTCGCCTCTACAAGGTGAATGTTACTACCAAGAGCGGCCAATATGAAACCAGTGTTTCCACTGAGGGACGAACATTCCCTGCTGCTGTGCGTGCACTAGCTGTGACCCAGAATGGCACCACGGATTTGAATGTGAGCTGGGAGGCAGCGATGGGTGACGTAGACTATTACGATGTCCAGATCCTGTGTAATGACACGGTTTTCTCTTCAGAGAGACTCAATAGCACAACACGACAGCATCGTTTCTCTCTACTCAACCCAGGCTACCGCTACAAAATAGTGGTGTCCACCGTCAGCGGCTCATTCGTAAGGCCCCAGATTGTAGAAGGCCAAACTGTACCCAGTCAAGTTGAGAATCTCCAGCTCATTCCAGGTACTCTTGGTGGCGCTCTGAGCGCCACCTGGTCCCCCGGAGCTGGAGACGTGGACTTCTATGAAGTGTGCTTGTTCCAGAGTGGTCATGTGAAAGTGTCTTACCGTGTTCCTAAGAAAGACAACAAGATGGACTTTAAAGGCCTTGTTCCTGGGGAGCTGTACACTGTATCTGTGGAGTCAGTGAGTGGAGAACTGAAGAACAGCAGCACAGCCAGTGGACGAACAGTTCCTTCCACAGTGAAGGGTCTTCACGCGGACATTGAGCAAACCACTCACAGCCTGAAAGCTGCTTGGGAGAGAGCAGAGGGTGTGTATGATGGATACAGTCTGCAGCTGCAGGACGAGGACGGGGCAGTGCTATATAATGTATCTGTTCCTGCCGGGGTCACACACCACCTGTTTGAAGGTCTTACTCCTGGGAGGTTCTACAGCATTCACATCAAAACCCTCAGCAACTCTACCTACAGCACGGTGGTTACAGCTAAGGGGCAGACACGTCCGGCTGTGGTGAAGGACCTCACTCTGCTTTCCAATAGGATGGGAGAGCTAGCATTCCACTGGAATGCATCTGAAGGATGGGTGGACCACTACAACCTCTACCTGTACAACATGGAGAACATGCTCCAGGACTACAGGAATGTAGCGGCGGCTGTACGGGACTACAGTTTCCCTCACTTGCTTCCTGGGACACCTTACAAGCTGGTGGTGGTCAGCAATAGCAGAGGAAGCAAGAGCAGTGACTCTATTTTGTGGGCGCAGACAGtcccTGCCCCAGCCTGGAATTTACAGGTTGACAATCAGGGATACTCAGACAGCTTGGAACTGACTTGGAAACGTGCTCCTGGTGGACTAAGTGAATATTTGGTCTCTTTAGAGGGTTCAGATCAGCCACAGCAGAAACTGGGGCCAGAACACACAGAGGCAATCTTCCGGGGTCTTCTACCTGGCCAACTATATACTGCTGTTGTGATCACCCGAAGTGGAAACCTCACCAACACTGCCACGGAAGTAGGCCGCACAGtTCCTGAGCCCCCATCCTCACTGTCTATTAAGGATGGCACTGGTGGCACTGTAGAGGTCATGTGGCACGCCCCAGCCAGAAGTATTCATGACAACTTTAACATTAATTGGATGCCACGAGACGCGCTGCAGGTGTCGAACCTGAACCCCACACGCTGCATCCTGGCAGGCCTTTATCCCGGCCGGCTTTACAATATCAGCCTGCGCACTGTCAGTGGAGGACCACCAGGACCTGTAACCTACAGCTCATTTGTATACCACACTGTTAGAACCGCTCCAGGACCAGTGCAGAGCATCAGCTGTCACCCTTTGAGCTCCACTTCACTCTCATGCTCCTGGAAGGCTCCAGTGGCCGATTATGACACTTATTTGGTAGAATGTAAGAAGCAAAGCTCTGCAGACCCAGTTCGCAAACTGACGTTGGGTCGTGACACAACTTTCCAGCATTTCGACAAACTAGAACCCTTCAGGAACTACACTGTTTCAGTCAAGGTGATGTCTGGAAACAGGAAAAGCCCGGCGACCCAGGACAACACAGTCACCATGATTGATCGGCCTCCGGTGCCTTCCCCCATGGTACGGATTGGTGAGCAAGCCACTCACATCACCCAGTCCACCATCTTCTTCAAATTCAACTGTAGCTGGTTCAGTGATGCCAACGGGGTGATCCGCTACTTTGCCATTATCGTTGCAGAATCTAACGACATTGAGCCCCTGCTGCCAGAACACAGGCATCCTCTGCCCTCTTACCTGGAGTACAAGCGCAACAGTTCCATCAGGGCTTACCAGACCAGTTACTTTAAGAGTCTGTGCAAAGACGATCCAGAGATAGGCAACCAGGTGCTTGAGATCAACCTCGGAGCTGGAATGGAGCGGCTGGGTGGACCATGCAAAGAAGAAGCTGAGcttgaaaaacatgaaaactctTACTGTGATGGACCCCTTGCATCCAGAACACCCTACAGGCTGAGTGTCCGTGCCTTCACTCAACTCTACGATGGCGAAAACAAGCAGTTTTCCCATCCTCTCTTCAGCGACActtacctctctctccctctgcgcACTAAAGCAGAGCCGATGGGGGGGATCGTGGAGGGCATCAGCACCGGCCTGTTTCTCATCAGCATGGTGATTGCTATAACCACCTTAATAATCTACAAGCAGAGGGTCCATAAAGTAGCGGTGCAGGAAAGTCCCGTGGTGAGGATGAGTATGTGGAAGGAGGTGTCTAATACAGGAATGTACATGGGCATCAGGAGTAACCGCTGCATATCTAGCCCAATTAAAGCAGCCCACTTCGAGTCTCATCTCTCCAAGCTTCAGGCTGACTCCAATTACCTATTTTCTGAGGAGTTTGAGGACTTAAAGGATGTGGGTCGCAACCAGACTCTGGATGCTGCACGTCTGCCTGAAAACCGCTGCAAAAATAGATACAACAATATACTGCCATATGATGCTACCCGGGTGAAACTGTTGTGCTTGGAGGATGACCCATGCTCTGATTTCATCAATGCTAGCTTTATCCCAGGTAACAGTTTTGGGCGTGAATACATAGCCACACAGGGACCACTCCCAGGGACCAAAGACGATTTCTGGCGGATGGTGTGGGAACATAATGTGTACAACATCGTCATGGTCACGCAGTGTGTGGAGAAAGGCAGGGTGAAGTGTGACCAGTACTGGCCCACAGACAGGGAACCGCTGTACTATGGTGAGCTTGTGGTGCACATGCTGTCTGAGTCTGTCTTGTCAGAATGGATCATCCGTGAATTTAAGATAAGTCGGGAAGGCCAGTTGAGCTACCCCAGGATAGTGCGTCACTTTAATTACACGGTGTGGCCGGATCATGGTGTGCCAGAAACAACACAGTCTCTCATTCAGTTTGTGAGGACCGTCCGAGATTACATCGACAGGGCACCAACTTCAGGTCCGACTGTTGTGCACTGCAGTGCTGGAGTGGGACGCACAGGCACCTTCATTGTTCTGGATCGTGCTCTGCAGCAGTTGGACAGTCGTGGCACTGTTGATATTTACGGCTCTGTGCGTGATCTCCGGCTGCACCGCATACACATGGTGCAAACTGAGAGCCAGTATATGTTCCTCCATCAGTGTGTGCGTGATGTTCTGAGAGCCAGAAAGCTTCGCTGTGAACAGGAGAATCCACTTTATCCTATCTACGAGAACTTCAATCCTGACTACTGTAGAGATTTTGTGTACACTGGACGCTGAAGACTGCAAGCATCCTGACAAAGGGGAGAAAAACCTATTTAATTTCCGTAAcataaagaaatataacattatttttatacagcACAAAACATTTAACATGGTAAAGATGTATGTATAATGAacatgtgtgtgttaatgtctttttttcttttattggtatTGGTATAGTAAAAAAACTTACTGATCTTTTGTTCTATTGTGTATTGTAAAGTCAGTTTGTCTTACTGAGTAACAGGAGAAACATGCACACATTCAGATGTGACAATCCTGCACTTCTGGTTTTCAGTTAGTGAATTCTTGCAATTAGCAACTTTGTAAAAGTAAATCCAAAATTTGACAAAGTTATCTGGCACAGCGATTAGGGCAGAGCTGATGAATTTTAAGGCATTGCAGTTTAATAACCCAATACTGATGGTGTATGAAATGTTGCTTGCTTGTGTCTGTATGAAATCCACTCAATAAATCCCTGAGGCAAAATAAATAGGGTATTAAGGTGCTACTGATTTGGCATTCTGATTAGTAGTAATAATCAGCTCAGAGTAGTATTGGGATTATCGAATTATAAATGCAGTACAATACACTTCTGCATGAACAAGACTACAATACTGTTTATCCACTTTCTGCTAAATCTGAACATTTATATGGGAAAGGGTGTACGCACCCTTACTGCACATGGCTGAAGGACAAAGTCAGACATATTATGATGCTCGAATCTAGAGAGCTGTCAAATATGTTTTACTGGAAACTGATTTAAAGGGAACTGTTCTAAATATGGAGATGTTTGGTTATTCCAATCAAAACCATCCAAATCCATCTGTTATTTTTTCTGCACATGAGAGTAACATCCACTGATACGTACACAATGCTTTGCATAACATTAGTACCACCTGTCTAATATTGAGAAGGTCCTCATTGTGTTGCCACAACAGATCTGACCAGTTAAGACAGAAACTCCTCTGTGACCTCTGAAGATGTCCTGTATTATCTGACCCCAAGACATTTATCTAGCAGCTACTcctgtaaattgtaaagtggGGCTTCTGTAAGCATGTTTTGAAGATGATCAAAATGTGTCCCTTTTCAAAGTGTTTCAGATCTATGTAGGTGTGTACAATCAGTTTTTCACTGCCGTTACATCATTTAAAAGAACAGTTAAACATTCTTAATGAAAAGAGTTAGTGACAATTTCTAGACTTGAGGGagacaataaaaatatgaacttgGTGTATTATGGTATATATGGTGGCAAATGGATTATTTTCACAACCACTAAAGCTCAGTGTTAGTATAAATGTGACATCACCATTAGTACCATTAGTATtaccattacatttttttattaccatacattcatatataaatatatacatatatatgtatatgtggagcatcttctAACGTACAATTGAAGCACCATTTCTTTAGTGTTAATACAGTGAAATATGTGTGCAGGTTATGTGTCCTGAGATATGTATATCTGTAATGAACAACAGTACTGAAGATATTGAATTTATGCAGACAaaatatttagctattttaagtGTTGTCATGCTACAAGTTTATACAATAGACCAGTAGGTCCTGCTGTCTATCATTTTTATTGCTTTCCCACAAAGCAACTGTATTCATACACAATCACATACTGAGCTATAGTGGGTGTTTCAAAACAGGCAAATAAACACTGTACCAGGGCCGGGGACCACTTTTCTGAACacagtatatatttactatTAGCCATAGCAGCTGTATTAGTTTGGTCATATAATTAATGTTGTGCTTTCATACGAAAGCTAGATAAAAGGCTGTTTTGTCACTTCTCTGTctaaaatcatatatttatatttatatttatatctataacttgactataatttaaataaaatagcacCACCTTAACAGAATCCATAAATCTGCTTGCATTGAAGGAATATGTGGATCAAAGCATGATGATTTAGGGTTTAATGTTTATTCAAACTATAAGCTTTGTACtgagattttaaatgtttaaaatgtcctaCTACTGAATGTAGCCacatataatgaataaaataaaggatGTATAAGCCATatccttttttatgtttattttttaaataaaatttaaatgtctCTATTATGTGACTGCATTGTAAATCAAATCACATTTCACTTAAACATGTATGAATGGAATCTAttgcaatgtttatttttaaataaaaagaaaagacaagtgtctgtgtgtattaTTCAACACTGCATGCATTTTTGAAGTCATGAAACATATTAAAGCAAACAAAATGTTGGATTCCTCACAGTACCCTCAGTATTgctttaatacagttttaaaatggaACACAAACATATAGGGAATATTTTATACACagtattgttgtgattaaacaGCATGAGTGATTATGATTAATCATGGAATTATGCTGTTATTAATCAGAATTTATTATCTGTTGACACCACAAGTAACAAGCAAATATATCACATAAAAATATGGCAAGTTGGTCATTTGATTACATGCTGGAAAACCCTACAatatggctgaattaaaacaattctgtaaa

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K05694 PTPRB, PTPB; receptor-type tyrosine-protein phosphatase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671526.1 True 8773 mRNA 0.44 31 22104840 22161850

Neighbor

gene id symbol gene type direction distance location
ptprr ptprr coding upstream 4204 21994110 ~ 22100636 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding upstream 148562 21932769 ~ 21956278 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding upstream 193263 21905259 ~ 21911577 (+)
msgn1 NA coding upstream 387892 21715452 ~ 21716948 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 666630 21410849 ~ 21438210 (+)
LOC103044887 LOC103044887,LOC108435120,LOC108279510,LOC101474374,LOC100702227,LOC108233439 coding downstream 19353 22181203 ~ 22243904 (+)
dus4l dus4l coding downstream 112791 22274641 ~ 22278022 (+)
bcap29 bcap29 coding downstream 122897 22284747 ~ 22297679 (+)
LOC103025638 mansc1 coding downstream 842905 23004755 ~ 23012773 (+)
lrp6 lrp6,LOC100705426 coding downstream 858534 23020384 ~ 23085044 (+)
G65910 NA non-coding upstream 12165 22092189 ~ 22092675 (+)
G65882 NA non-coding upstream 115297 21989245 ~ 21989543 (+)
G65874 NA non-coding upstream 134763 21969509 ~ 21970077 (+)
G65873 NA non-coding upstream 142395 21959215 ~ 21962445 (+)
G65875 NA non-coding upstream 146153 21958326 ~ 21958687 (+)
G66048 NA non-coding downstream 116578 22278428 ~ 22278731 (+)
G66053 NA non-coding downstream 117898 22279748 ~ 22279994 (+)
G66055 NA non-coding downstream 118924 22280774 ~ 22281491 (+)
G66056 NA non-coding downstream 121584 22283434 ~ 22284072 (+)
G66062 NA non-coding downstream 156993 22318843 ~ 22319548 (+)
gen1 gen1 other upstream 389403 21629787 ~ 21715437 (+)
agbl5 NA other upstream 555678 21440409 ~ 21549162 (+)
G65575 nav3 other upstream 1080266 21024175 ~ 21024574 (+)
G65565 NA other upstream 1147205 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 2310515 19780663 ~ 19794325 (+)
ccdc167 NA other downstream 777705 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 837520 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 969230 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1060664 23222514 ~ 23323361 (+)
G66296 NA other downstream 1282324 23444174 ~ 23444677 (+)

Expression


Co-expression Network