cog5 (cog5,LOC107583928,LOC107656447,LOC107658957)


Basic Information

Item Value
gene id cog5
gene name cog5,LOC107583928,LOC107656447,LOC107658957
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22248887 ~ 22273098 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671527.1
AGCTCGCGCTGGGTAGTGTCGCAGAGTGTTCACGTCATGAGTGAGGTGGCAGTAATGGAGGCTGGAGGAGAAGAGGCGGCCGCGGTCTCTGTGATTAAAGAGCTGAAGGACGAGAGTTATGGAGAATTTCTGAAGCAGGAGTTCGATGTGAAAACATACACAGCGCGCGCCATTCATCATGCAGTCATCGCAGAGCAGCTCGCCAAGCTCGCGCAGGGCATCAGTCAGCTGGACCGAGAGCTGCACTGCCAGGTGGTGGCCAGGCATGAAGATCTGCTGGCGCACGCCACAGGGATCGAGTCTCTGGAAGGTGTGCTGGAAATGATGGAGACAAGGATTGCGGCACTGCAAAGTGCTGTAGACAGGATACGGACCAAAATAGTTGACCCCTATAATAAGATTGTGGTTCGGACTTCTCAGCTTGCACGACTACAGGTAGCGTGTGATCTGCTCAGGAGAATAATCCGTATCCTGTATCTGAGTAAGCGCCTGCAAGTTCAACTTCAGGGTGGCAGCAGGGAGCTGACCAAAGCTGCCCAGAGCCTCAATGAACTGGaCTATTTGTCTCAGGGAGTTGATCTGTCTGGGATTGATGTCATTGAGAATGACCTGCTGTTAATCAGTCGTGTGCGCCTGGAGGTGGAGAACCAGGCTAAAAGAATACTGGAGCAGGGAATGGAGATTCAGAACCCCTCTCAGGTGGGAACAGCACTGCAGGTCTTCTACAATCTTGGCAGTTTGAGAGAGACCATCATCAGTGTGGTGGATGGCTACAAGGCTTCTGTCCAGGAGAGCATAACCAGTGCCCTTGATGTTAAAGTCCTTACTCAACCTGCAAACACCAGAGGGGCTCCAGGTAGGGCTGTTATACCGATTCCAGGAAACACAGCTACTTTTCGTGCTGCTCTTTGGACCAACCTAGAGAAGCTAATGGACCACATTTGTTCTGCTTGTAGTCAgGTGCAGCACCTTCAGAAGGTCCTTACCAAAAAAAGGGATCCTGTCACTCACGTGTGCTTCATTGATGAGATTGtcaagGAAGGTCATCCAGATATCTTATACATTTTCTGGAATTCTGTTACTCAGATGCTCTCTGTGGAACTCAAAAAAAGCACACAAGcCTCCACGTTCCTGAAGCAGGCTCTGGAAGGAGAGTACCCTAAGCTCCTGAGACTCTATAATGAGTTGTGGAAACGGCTACAGCAGTATAGTGCCAAGATACAGGTGGTGCCGGTAGGCAGTGGCTCAGGGCTGGAGTTTGATTCAACAGTGACTGAAAACGACATTCAAGACCTCTTCACAAATACTAAACAGGAGTATGATCCAGAGAAATCCCTGAAGGAGTCTCTGCAGCCATATGAAGCAGCCTACCTCTCCAAATCACTCTCACGTCTGTTTGATCCAATCAACTTGGTTTTCCCACAAGGAGGGTATAGCCCTCCAGCCAGCGATGAGATGGACAGTATCATCAAAACCATCGCTAGTGAGCTGAATGTTGCGTTAGTAGACCCTGGATTGACTGTTGCTGTGGCAAAGAATGTCGCCAAGACAGTGCAGCTCTTCTGTGTGAAGTCTGAGCAGCTGCTCTGTACACAGGGGGATGCCAGTCAGGTGATTGGACCATTAACCGAGGGTCAGAGGAGAAATGTAGCAGTGGTGAATTCACTGTACCAACTACAGCAAGCTGTGTCTAAAGTCATTTCTGCGCTGAGTATCCCTGTGGATGCAGAGCAATCACTTACAGCCTCTTTGGAGTCAGTGCAGGCTCTGATGGACAGTGCAGTCCAGCCGTTGTTGATGTCCGTCACAGACTCTGTGGAGGCCATTCTAATTACTATGCATCAGGAGGACTTCTCTGGccCCATCCCTGCAGGAGATAAGCCAGACATGCCTTGCTCTCTGTACATGCGAGAGCTGCAAGGCTTTGTGACCCGGGTGATGAATGACTACTTCCGTCCACTGCAGTGCCTGGATTTTCTTTACGATAGAACAGAGGGTGTTGCCCAGCGTGCCATTACTCTATTCATCCGCCATGCATGCCTACTGCGGCCACTCGGCGAGGGTGGCAAAATGAGATTGGCTGCAGACTTTGCCCAGATGGAACTGGCTATTGCACCTTTCTGCAGACGAGTGTCAGACTTAGGGAAAGTGTACCGCTTGCTGCGTTCATtcagGCCTCTTCTGTTTCAGACGAGTGAGCACATATCTAGCTCTCAGGCTGTGGGTGATCTGATTCCGTACAGCACAATCCTGCACTTCCTCTTCACTCGAGCCCCAGCTGAACTGAAATCTCCTCATCAGAGAGCCGAGTGGTCTGTAGCACGGTACTCTCAGTGGCTTGATGATCACCCCTCAGAAAAGGACCGACTTGTTCTAATCAGAGGGGCTCTGGAGGCTTATGTGCAGTCTGTACGGGCCAGGCAAGGGAAGAATTTCGCACCTGTGTATCCTGTCATGCTCCATCTTCTACAGAAGGCCACCAGTGGGACATAAGATGATTTTAAAGAATCAAGAATTAACAGAATAACTTAAATCACTTTTAAAATCATTACTAAAAGGTGCAAGCAATATATGttccttctaattcagattATACATTTCCTTTAATTCTTTTAGTCTCCCCAGCATTACATGCTTTAATTGACCATATTGTATATGTACACATCCTTTCTAAGTTCCTATTTCATGTTTGGTGCAACGCAGCTGGAAGATATTGAAaagtaaatgataaataaattaacttactGAGCAAAGCTTGAGcgattttattttacacaaacatagcTTCATCTATACTGTAGTATAGCTGCACCTAACATTGGCAGTATACAGAAACTGGACTAATTCCTGTTCTCAGTTGGGAGCAGTGGGAATGTGAAGTACTACGTTTGTGAACCCCCTAGGAACCACCACAAACACTGTAGCAACCGTAGCCTTTATTCAACAATACCTGGCAACACCATAATAAGCATCAAGTAACTGGATTGTAACCACGTGGGGATACCACTGCAGCCACCTACCACATACATGCagcatattaataataataacacaagaTGTTGTCATCTTTGTgaacattttgtacatttgttaAGTCACTGGAATCAGGACTATCAAAGCACACTTTATTAGGTCCTGTAGTCAAACCCGCCAAAAACCTGTAATAAAACGTATATACTGTCCGGGTTAATTCCCAAAATTGAAAGTTTTGAAGTAAACTGGAATCACTGACTAATAACTGGGCCTTTCACTAATTTGTTTAAGTGAGCATCAGTAAAAGGTAACTATAATTTTGCTactagaaattagaaataaatgacaTTGTTACATAAATTGCTGTGGAAACTCTATGCCGTGAAAGctagtgatgttttttttttctatgtttttagagtttgtcattttcattttctattttatgcagttttttcctttttccaagttttttaaaatgctttttaataagACAGCAACAATCAACCATGCTGAATTACAGCACACTTTTAAAAACTATGTATTATGCAGgatgcttaaaaaatatatgtaaaaaaaaaaaaaaaaaaaaaaaaatcctataacTGGCTGGGCTGAGCCCCGGATCTTTAGATAACCAGGCAACGTCCCTGGTGGCTTCCTCTGCCACTGCTCCTTTGTCAGCAACAAAATGTGCAACACCCTCTGGCCTGGCAATGGCCACTAAAGGACTAACCTACTAAAGGACTGAAGACAGGACTAGGAACTTACCCAGAGCCTTCACTTCTGTGCCAGTGCTACCCACTAATTATGCACCTCCCACCTCCGCTCCTTTCCCATGTCCACAGCACTTGTGGCAGTGGTGCACCGTCTTTTCCCTGTGCCAGCTGCACCTGCCAGTCCTAGCACCAGTGCCAGTTGCACCTGCTGCTTGTCACCCCAGCTTACATGTCAACTCCCAATTTGTCTGATCCAGTATCGACATTCAGAACTTCGCCCAGACTCGTCTCACAGACTCAGAGTGTACCTCAGACTGTGTCACCAGGTTCATACCTGTTCCTGTTCAGAGAAGGCCCAATGATTTCtgcaaataagaaaatacatgtttgttttaaatttaaaagattACACCAATCAGTTTACACTGGTTTATTGTTACTTTTTGGTtggaaacaaaacaaatcaaccCCAATTATCTCATAACTCTAAACAAACAGCTCGGTAACTGCTTAACTGGAAGCTAAAATAATAGTCACCTAACATCCATGAGCTAGTCACAGTGTTGAACTTTATCACATGCAGGTGAAAGGGTCAGCTACAGAATCAAAAGTTCTGTTTATTGGAGTGAAAATGTGTGCACATGTTTCCACCAGATATAGTACATTAATGTACACATGATGCTTGGTTACTTAATTCGTATTATCAGCACTTggttaaattataattatttttgtggAGTTTTATAAACGATTGCTACTCCTATATAAatcagtgttgtttttaaaatagtttacagTGCTAAAGAAAAACAGGATTACTAGATTGTCTTTTCTCccactcttttctcttttcttgtaaaatatatagtataaatgtAAAACAAGAAGAACCttgagaaacagaaacatttttaaTGACAAATGAACaagttttgcattttttggATCTGTATCATCCATGTGGAAAAAGTTATTAATAGCCACTGTAACCAGATGTTTACAGTAACTGAGTAGCAGTCTTTTATGTTGCTGTAGGGTGATTTTAACCTGCTCATTCCGAGTCACTTTGGAGGGATGTGTAGCATGAACTGCCACAGTATCCTGACGGCCCAAGTTTGCCTCTTTAAAAGCtaattttgtttctttgtgttgATTTGCTCTTGCACTTCAGATTGATTAACATTGTTACACTAGTCTAGTGCTCCAACCTAGTCCAATTCCACAGAGCGGATTAAATTGATGTATgattaaaactaactgaactATTAA

Function

symbol description
cog5 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5).

NR:

description
conserved oligomeric Golgi complex subunit 5

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20292 COG5; conserved oligomeric Golgi complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671527.1 True 4961 mRNA 0.44 22 22248887 22273098

Neighbor

gene id symbol gene type direction distance location
LOC111192879 NA coding downstream 258817 21989255 ~ 21990070 (-)
LOC103040999 LOC103040999 coding downstream 278245 21965977 ~ 21970642 (-)
LOC103040407 NA coding downstream 371185 21823896 ~ 21877702 (-)
mrps10 NA coding downstream 430739 21809285 ~ 21818148 (-)
LOC103044186 NA coding downstream 862428 21374232 ~ 21386459 (-)
LOC103043373 LOC108435080,LOC108279430,LOC107729145,LOC107656392,LOC107590530,LOC107583931,LOC107708018,LOC107658953 coding upstream 32107 22305205 ~ 22352523 (-)
pde3a pde3a,LOC107707962 coding upstream 90056 22363154 ~ 22401341 (-)
ada2 cecr1,LOC108442796 coding upstream 638089 22911187 ~ 22930186 (-)
LOC103026244 atp6v1e1b,atp6v1e1,LOC103026244,LOC108442797,LOC107658907,LOC107583987,LOC100708725 coding upstream 657124 22930222 ~ 22937099 (-)
LOC103031542 LOC103031542,LOC108443062,LOC108279885 coding upstream 676399 22949497 ~ 22991675 (-)
G66022 NA non-coding downstream 86487 22161671 ~ 22162400 (-)
G66004 NA non-coding downstream 117294 22131088 ~ 22131593 (-)
G65963 NA non-coding downstream 283191 21964958 ~ 21965696 (-)
G65950 NA non-coding downstream 287781 21959297 ~ 21961106 (-)
G65949 NA non-coding downstream 289969 21957494 ~ 21958918 (-)
G66052 NA non-coding upstream 5999 22279097 ~ 22279414 (-)
G66080 bcap29 non-coding upstream 19999 22293097 ~ 22298282 (-)
G66074 NA non-coding upstream 26383 22299481 ~ 22361569 (-)
G66084 NA non-coding upstream 38369 22311467 ~ 22313798 (-)
G66085 NA non-coding upstream 47083 22320181 ~ 22321222 (-)
G65803 gen1 other downstream 564059 21629958 ~ 21684828 (-)
ost4 NA other downstream 674688 21545418 ~ 21574199 (-)
llph llph other downstream 2449285 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 2643162 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2878179 19305987 ~ 19370708 (-)
G66081 bcap29 other upstream 17587 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 780175 23053273 ~ 23160179 (-)
G66619 NA other upstream 2234736 24507834 ~ 24508281 (-)
G66642 NA other upstream 2386926 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 3243417 25516515 ~ 25530980 (-)

Expression


Co-expression Network