LOC111193004


Basic Information

Item Value
gene id LOC111193004
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23995282 ~ 23999500 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671550.1
gggaaaagtaaaaaaaaaaagaaaaaaaagaaaatacaaaaaaatatatgttgcttattattttttacactgacaaaTACTCTGCGTCTGAATCCGTCCCACCTGCGAGAATTAGATCTGAGCTACAATCCAGTAGAAGGACCTGGCTTTGACCAGCTCAACTCTCTTGTAGAAGATCCAGCAATCAGACTGGAGAAAATAGTTGTAGAAGACTTTGGAGAGCATCGCAGCACTGAAGAGCTTCTGGAAAATCAGTGCTCTCTGACTCTGGATCCCAACACAGCCTCTGTAGAACTGAAGGTGTCTGAGGGTGACAAAGAAGCATGGCATTATTACCCGCCATTTTTCCTCTCAGAATACCCACAGCCTCTCCCAGAACATCCAGAGAGGTTTAAAGTGTATTCCCAAGTGATGTGCAGAGAAGGGCTCTCTGGTCGCCACTTCTGTCAAGTACAGTGGTTTGGAAGGTTTGCCACTATCGGGGTGGCCTACAAAGACATAAGCAGGAAAGGGCCTGTCAAAGCCTGTACCCCAGGAGAAAACAAGAAGTCATGGGCTATTACATTAAGCACACCCTTTCCCTTGTCGCTGGCAGTGCATGATGGGGTAGAAACTCAACTTCCTGATCATTTACCCTGGAGAGTTGGGGTGTATCTCGATTGGGCTGCAGGTATTCTGTCCTTCTATGATGTCACACATGACAAGGCTGAACTCATTCACACGTTTTATGCCAAATTCACCGGACCACTCTATttggtgttcattgtttctgcTGGAATACGTCTGCTGCCACCAAACCCTGGCCCTGTCTGCTGCcatgacttgttttaaggattGTAAAAGCTGCAATGGATCAAAAGCAGTCCAAAATACCACTAACAATGATCACATGCTTCTTATAGACACGCACAATGCCCTGATTACCTTTTCTCTTGTTGCTCACAATGTTTTATTCTGAAGAtaccatttaaaatatttaaaaattgtacACTTTGACATTATTATGTTAGAGATTACTGAGGAGTGGAAAGAGTGACTCATTCCTACACAAAATGTCAATACTATTATCCACATTTCCCACTTTGCTTTAAATGATGTACGGGCggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671550.1 True 1108 mRNA 0.43 3 23995282 23999500

Neighbor

gene id symbol gene type direction distance location
LOC103022521 NA coding downstream 2469 23961974 ~ 23992813 (-)
LOC103047861 LOC107575455 coding downstream 88328 23893562 ~ 23906954 (-)
LOC103028371 NA coding downstream 108496 23872673 ~ 23886786 (-)
LOC107197793 NA coding downstream 128351 23850890 ~ 23866931 (-)
LOC103027854 NA coding downstream 148371 23831703 ~ 23846911 (-)
LOC103022829 NA coding upstream 2182 24001682 ~ 24018717 (-)
slc16a7 slc16a7,LOC108248566 coding upstream 230715 24230215 ~ 24268449 (-)
atp23 atp23,LOC106609469,LOC106576246 coding upstream 362507 24362007 ~ 24367573 (-)
LOC111192881 NA coding upstream 385464 24384964 ~ 24388696 (-)
LOC111192914 NA coding upstream 392511 24392011 ~ 24397445 (-)
G66438 NA non-coding downstream 82809 23911791 ~ 23912473 (-)
G66416 NA non-coding downstream 296855 23698158 ~ 23698427 (-)
G66414 NA non-coding downstream 331313 23602466 ~ 23663969 (-)
G66312 NA non-coding downstream 478699 23508983 ~ 23516583 (-)
G66300 NA non-coding downstream 545496 23449400 ~ 23449786 (-)
G66496 NA non-coding upstream 291088 24290588 ~ 24290790 (-)
G66509 NA non-coding upstream 353801 24353301 ~ 24353703 (-)
G66600 NA non-coding upstream 368613 24368113 ~ 24368356 (-)
G66601 rpap3 non-coding upstream 368938 24368438 ~ 24373280 (-)
G66602 rpap3 non-coding upstream 374401 24373901 ~ 24380582 (-)
dusp16 dusp16 other downstream 835103 23053273 ~ 23160179 (-)
G66081 bcap29 other downstream 1703600 22290685 ~ 22291682 (-)
G65803 gen1 other downstream 2310454 21629958 ~ 21684828 (-)
ost4 NA other downstream 2421083 21545418 ~ 21574199 (-)
llph llph other downstream 4195680 19795154 ~ 19799602 (-)
G66619 NA other upstream 508334 24507834 ~ 24508281 (-)
G66642 NA other upstream 660524 24660024 ~ 24661902 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other upstream 1517015 25516515 ~ 25530980 (-)
tmem258 NA other upstream 4033201 28032701 ~ 28035961 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other upstream 4121760 28121260 ~ 28132788 (-)

Expression


Co-expression Network