LOC103026250 (gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493)


Basic Information

Item Value
gene id LOC103026250
gene name gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 25577886 ~ 25609148 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671565.1
tctctctctctctttcaggtgCGGGGGAGTCGGGGAAGAGTACGATAGTGAAGCAGATGAAaatCATCCACGAGGCTGGTTACTCGGAGGAGGAGTGTAAGCAGTATAAGGCTGTGGTTTACAGCAACACCATCCAGTCCATCATCGCCATCATCCGCGCCATGGGCCGCCTAAAGATCGACTTCGGGGACGCGGCGAGAGCGGACGATGCACGGCAGCTGTTCGTGTTAGCGGGCAGTGCGGAGGAGGGCTTCATGACCGCTGAACTGGCCGGAGTGATAAAGCGACTGTGGAAAGATGGAGGAGTTCAGGCCTGCTTCAGCCGATCCCGAGAGTACCAGCTCAACGACTCCGCCGCCTATTACCTGAATGATTTGGACAGGATATCCCAGACTACATACATCCCCACGCAGCAGGACGTGCTGAGAACTCGCGTTAAAACCACCGGCATCGTGGAGACACACTTTACCTTCAAAGACCTGCACTTCAAGATGTTTGATGTTGGAGGTCAGAGGTCGGAGAGGAAGAAGTGGATCCACTGTTTTGAGGGTGTGACGGCCATCATCTTCTGCGTGGCTCTCAGCGACTATGACCTGGTGCTGGCTGAAGATGAGGAGATGaacCGGATGCATGAGAGTATGAAGCTGTTTGACAGCATCTGCAACAACAAGTGGTTCACAGACACCTCCATCATTTTGTTCCTGAATAAGAAGGATCTGTTTGAGGAGAAGATAAAGAGGAGTCCGCTGACCATCTGCTACCCAGAATACGCAGGCTCCAACACGTATGAGGAGGCGGCGGCGTATATCCAGTGTCAGTTTGAGGATCTGAATAAACGGAAAGACACAAAGGAGATTTACACACACTTCACCTGCGCCACCGACACCAAAAACGTCCAGTTCGTCTTCGACGCCGTCACCGACGTCATCATCAAAAACAACCTGAAGGACTGCGGACTCTTCTAGGACCACGCTGCAGCCGatgGAGTCAGTTATTGGAGGTATGCATTGATGTTGGACGGCGGTTCTGAAGCTGTGTGGAGATGTATCTCCTGGACCTGTGCTGTACATTGCGTCGTGTTCATCTGCTTTATTTATGCTTCTGTCTCGGGGCATTTTCAACAGTAGCGCCTTCCAAAACTACAAAAACGagaaaaacaagagagaaatctgtttgtacgactttttattttctgtccCAATGATATGTTACATTATGTACCCCGTTACGTTACGTTTCCCCTGGCGACCCATTTCCTCTTCACTAACGGACCTGGTTTAATTCCACCTTTCCATTTTCAGGAGAAGGTTTGCCTCTGATGGATGTTTTTATCTCCTGCACTCAGTGGGTGTTAcctgtgggggcggggcttgggGTGGGGGGGAGGAGTGTGTTTTAATCTGTCCGGTTTGTTGGTTCTGTGCCTTGCCATGTGTTTATGGTTGTTTGTCTCATGCTTGATTTATTTGCCTGCTGAAAATCTGCCAACATCCcaactgtaaaatactgtaaactgAGAATACACACATAAACGTCTTTATAGCAGTACACACCAGTGTGTGTCTgatcatata

Function

symbol description
gnai1 Predicted to enable G protein-coupled serotonin receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in barbel; brain; gill; lip; and sensory system. Orthologous to human GNAI1 (G protein subunit alpha i1).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(i) subunit alpha-1

GO:

id name namespace
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671565.1 True 1574 mRNA 0.50 8 25577886 25609148

Neighbor

gene id symbol gene type direction distance location
ireb2 ireb2 coding upstream 30218 25531046 ~ 25547668 (+)
wdr61 wdr61 coding upstream 62538 25508880 ~ 25515348 (+)
sin3a sin3a coding upstream 128630 25426737 ~ 25449256 (+)
ptpn9 ptpn9,ptpn9a,LOC107727494,LOC107673262,LOC107560010 coding upstream 154222 25394435 ~ 25423664 (+)
snupn snupn,LOC107673280,LOC107738646 coding upstream 190766 25378437 ~ 25387120 (+)
LOC103027045 magi2 coding downstream 95129 25704277 ~ 26025417 (+)
nup107 nup107,LOC107710680,LOC107590859 coding downstream 434099 26043247 ~ 26069392 (+)
slc35e3 slc35e3,LOC107737854,LOC107710682 coding downstream 463437 26072585 ~ 26081131 (+)
mdm2 mdm2,LOC107577534,LOC106599688 coding downstream 495609 26104757 ~ 26118299 (+)
LOC111192885 NA coding downstream 1887647 27496795 ~ 27497727 (+)
G66756 NA non-coding upstream 1692 25575855 ~ 25576194 (+)
G66755 NA non-coding upstream 5727 25570838 ~ 25572159 (+)
G66748 NA non-coding upstream 16705 25560494 ~ 25561181 (+)
G66739 NA non-coding upstream 58339 25478860 ~ 25519547 (+)
G66718 snx33,LOC107680142,LOC107560006,LOC107673279 non-coding upstream 237430 25335335 ~ 25340456 (+)
G66833 NA non-coding downstream 3738 25612886 ~ 25614889 (+)
G66837 NA non-coding downstream 23645 25632793 ~ 25633083 (+)
G66842 NA non-coding downstream 79256 25688404 ~ 25689235 (+)
G66851 NA non-coding downstream 106828 25715976 ~ 25716238 (+)
G66854 NA non-coding downstream 128239 25737387 ~ 25770761 (+)
cspg4 cspg4 other upstream 277011 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 893306 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 1025546 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 1194864 24367492 ~ 24383022 (+)
LOC103027234 timp3,LOC108412896,LOC106609153,LOC103152565 other upstream 1857792 23698152 ~ 23720094 (+)
LOC111192916 NA other downstream 471304 26080452 ~ 26092119 (+)
oaz2 oaz2,LOC108432726 other downstream 2540112 28149260 ~ 28220857 (+)
G67459 NA other downstream 3947988 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 3976828 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 4678387 30287535 ~ 30289624 (+)

Expression


Co-expression Network