trhde (trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683)


Basic Information

Item Value
gene id trhde
gene name trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26285301 ~ 26778380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671576.1
ggagggtggagatggagggagagatgATGATGGAGGCGCGCgcagaacacacacagcagcagcgcGAGCAGTTCTAACACACCACCAGACCGCtagattaacacacacacactaagacacatacacacacacacatcaacacacacccttgcactcacacactccctctgtctctctgtaacacacactcacactcacacatacgcCGGAGAGGGGTCCGCGCGCCGGTCCGGGAGGGATGCACGCTGAGCTCGGACGTGATCTCTCACGCCGATGGGGATCGAGGCCGTGATGAGTGCGCGGACTGGGCGTGCCCTCTCTGACCAGTGGGCAGACGGCGTGGCTGTGCGCCCACGCACCACCGAACGCCACATCACGGTGCACAAACGACTCGTTCTGGGCTTCGCTGTCTCCATCCTCGCGCTCATCGCCGTGACGGCGGTGGCAGTGGCACTTAGCGTAAAGTTCGAGCGCTGCACGGGAGAGCCTAATGGTGGGGAGGCACTCGGAGATGCTAATGCACGTTCCACGCCCGGCACGAGCGGGGCCACGGGCACAAGGACGCACGATGCACGGACCAGAGGAGAGGGGGACAACGACGATGACGACGAGGATGCTCGCTTCCCTTGGCGACGGGCGCGCCTCCCGACGACGCTGCGCCCTCGTCACTACGAGCTCACGCTCTCTGTACATATGGACAACTTCACGTTTGCCGGGTGCGTGAACATCGACGTGGAGTGTGTGAACGCCACGCGCTATGTGGTGCTGCATGCAGACGGGCTCGACATTCGCACCGTGACCCTGATGCACGCAGACGGGCGCAGGGCCGGTGCAGGAATGGTGCGTGTGCACAGGCACTTTGCGTACACGTCCTCGCAGCTGCACGTCATCGTACTGCACCGCGAGCTTAAGCCGCTGCGCACCTACAGATTGAACATCACCTTCAACGCCCGCAGAGAGAACGAGCTGCTCGGCTTCTTCCGCAGCTCCTACATGCTGCACGGGGAGAGGAGgtttcTGGCGGTGACCCAGTTTTCTCCGACTCATGCGAGGAAGGCTTTCCcgtgttttgatgagcccatctATAAAGCCACCTTTAAGGTGAGCCTGAGGCACGAGGGCTCGTACCAGTCCCTGTCCAACATGCCGGTGGAGGCGTCCACCCTGGACGAGGACGGCTGGGTCACCAATCACTTCTCCAGGACGCCCCGCATGTCCACCTACTACCTGGCCTGGGCCGTGTGCAACTTCACCTACCGGGAGGCCGTCACCGACAGCGGAGTCGTGATCCGGCTGTACGCCAGGCCCGACGCCATCCAGAGCGGATCGGGAGACTACGCCCTGCACATCACCAAGAGACTGCTGCATTTCTACCAGGATTACTTCAAAGTCAAGTACTCCCTGCCTAAATtagaCTTGCTGGCAGTGCCGAAGCACCCGTACGCTGCGATGGAGAACTGGGGTCTCAGTGTGTTTGTGGAGCAGAAGATTCTTTTGGATCCTGAAGTTTCATCTTTCTCCTACCAGATGGAGCTTACCATGGTAGTGGTGCACGAAATATGCCACCAgTGGTTTGGAGACTTGGTGACGCCGGTCTGGTGGGAGGACGTGTGGCTGAAGGAGGGATTCGCTCATTTCTTTGAGTACGTTGGCACCGACTTCCTCTTCCCCAAGTGGAACATGGAGAAGCAGAGGTTCCTGACTGACGTTCTTCACGAGGTGATGCTATTGGACGGTCTGGCCAGTTCACATCCCATCTCACAGGAAGTATTTGAAGCCACTGATATCGACCGGGTCTTCGACTGGATTGCCTATAAAAAGGGAGCAGCACTGATTCGTATGCTGGCCAACGTAATGGGACAAGCTGTGTTCCAGAGAGGACTCaatGATTACTTAATGACGCACATGTATGGGAACGCGGCGAGGGATGACCTGTGGAACAAGTTTTCTGAGGCTATGCAGAGGGAAGGGAAGGACATCAACATAAAGGAGGTGATGGACCGCTGGACGCTGCAGATGGGCTACCCTGTAGTCACCATCAGTAAGAACGACAGCTTGGGCAACACTGTCACCATCACCCAGGAGCACTTTGTCTACGACATCGAGGCCAAGCTGCGCGACCCTGACCTTTTCAACAAAAGttTCCAGTGGCAGATCCCGCTGACGCTCTCGGTGGGAAACTCCAGTCACATATCGCCCGAAACCATCATCTGGGTCTCCAATAAAACAGAGACGCACCGAGTGGGCCGCATGGAGGAGGAGACCTGGTTGCTGGGCAACATCAATCAGACGGGCTACTTCAGGGTGAACTATGACCTCCACAACTGGAGACTCCTCATACAGCAGCTTATGATCAACCCCACGATCATCTCAGTGGGCAATCGAGCAGGCCTGATTGATGACGTCTTCAACCTGGCCAGGGCTGGGTATCTTCCTCAGAACATGCCGCTGCAGATCATCTCTTATCTCTCCGAGGAGAACGAGTTCCTGCCCTGGCACGCTGCCAGCCGAGCCCTGTACCAGCTGGACAAGCTGCTGGACCGCACCGAGGACTACAGCCTGTTTAGTGACTATGTGCTGAAGCAGGTGGCACCAAAGTACCATAAACTGGGCTGGCCGAGTACCTCCGCCGATGGGTCGTTCCTGCAGGCCGCCTATCAGACAGAGGAGCTGCAGAGGGAGGTGATCATGCTGGCCTGCAGTTTCGGGAATAAACACTGCCACCGCCAAGCTGTGACCCTCATCTCCGAGTGGATATCCAACAACAAgaacagGATCCCCCCGAATGTGCGGGACATCGTGTACTGCACGGGCGTGTCTCTGATGGACGAGGACGTGTGGGAGTTCATCTGGATGAAGTTCCACTCCTCCACGGCTATCTCCGAGAAGAAGGTCCTGCTGGAGGCTCTGACCTGCAGTGATAGCAGCGTCCTGCTCAACAAGCTGCTCAATCTCTCTCTAAGCTCAGACCTGGTACCAGATCAGGACGTCATCGACGTGATCATCCACGTGGGCCGCAATCCGCACGGACGCCACTTAGCGTGGAGGTACTTCAGGGAAAAGTGGGACATGCTGAACTCCAGGTACGGCGAGGCCTTATTTATGAACTCTAAATTAATCAGCGGGGTGACGGAGTTCCTCAACACCGAGAGCGAGCTCACTGAGCTGAAGGAATTCATAGAGACGAGTGGCGGAGGGGCGGCGTCTGCTTTCGCCCGAGCCATGGAGATCGTCCAAGCCAACGTGAAATGGCACAACCTCTACAAGCAGCAGTTTTTCCAGTGGCTGAGGAAATCGCCCAACGGCTAACGCAGAACCTCGCGCCTTTTCTGCTAGCATGGAATCTCCATCAAACATTTATAGGCCAATAACAACAGGAGGAGATAAgaggaatttaaaaaataactttttttggaCCCCGATAGTCTGTAAAATCAAGCCTTTTGTTTCCCCctggaaaaaagaagaaatgagcAGGCCTTGACAGAAGCAGGCGAGgaaagacttgggacttgagaCGGGTTAAAAATCGTAATTGAGTGTTGCATGGTGGTGTACATCTCTCGTGacatttcttctttctttttaaagtagCCCTCACTACCTTACCTCTTACCACTTACCCCACCCGACCACCACCCCACCTCCCCATCTTTTTTAATGCATGAAAGTCATTCCTGAAATGTCCGCTCTTCTCTGAGAGTCCTTGAAGATGGGAAGCTCAGGTTCAAATCCGTTCCAAACCTCAACTCAACCCAGTACTCAACAGTATGTTATTCACAAACTTAGATAAAGCACAATGTCATTCAACATGACAATCAGTGTTGTGATTGGACCAGAACGTGTGGACAGATGATGGAAAGCTTTTGACGGACGATTTTTGTTCCCTTTCTTCAAGCCATAGAAGAAGCAGGTGACCGGAGAGGATTGGGAGTGTACTTTGGGTATTACGAGTTTTTTAGAATGCCATTTGGTATTTGCAATGCACCGGTGACTGGAGTTATATGGAGTAATCTGAAGATATATGGAGTTTTTGTGAGCTGCATACCAATTGGTTATACGTGTCTTGGTCTATGGGTCAGTTCAGTGCTCCCTGTACTATATTAGCAGGGCCACTGCTGACTTGAGGCCTGTCCTTGGATATCCAGTGTAAATGTTGAGTGGAAATGTTGAAAAGAATAACCAGTGTGTCTGTCGATATGTTCAATAGTTGGTCAATGAGGTGCAAGAGACAAAAGATGAAAGAcagatgctgatgctgatgatgtTGCCATGCCATGCCTGTCATGGTTATCATACCATGAACGTGGCTcaaatttttgcttttttttttttttgcttttctctttttgttaCTTTGTTATTTCATTTTCCCTGACAATAAAGAAAGAACATGGACGGgtagaaataaagaaatctaTTTAACAACAAAGACAAATGTGCAACATTCCTGGCTATAACaatgaacaaataaacaaacaaaccagtaaataaataaataaataatctctTCTTCGTTCTAGAAAACCAACCTTCATTCCTGCAGCAGCCCAACCCAAGAAAACCTTCAGCAGCCTGCCTCGCGTGTCGCAAGCAATCTCGCAAAAGATAGAAACCTTGTCTTTTTACTTTCTGTGAATCAAATCCCTGAACAAGTAATCTAGTCTGCAGGATGcactatcaaaaaaaaaaaaaccttccttTCCGTCCCTGttcgtatgtgtgtgttatcatGCTGTTCCATCATGTGGTTCCAGCCTTTGCTTCTATATTGTGTTTTGACGTAAGCGCTTTCTTTTCTAaacgacagaaaaaaaaaatatcctctGTGTTTTGAGCAGAGCAGTGTAGAGATTTTACTGCTGACAATAAATTCTTTTGTATGCTAATGCA

Function

symbol description
trhde Predicted to enable metalloaminopeptidase activity; peptide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including peptide catabolic process; proteolysis; and regulation of blood pressure. Located in extracellular exosome.

NR:

description
PREDICTED: thyrotropin-releasing hormone-degrading ectoenzyme

GO: NA

KEGG:

id description
K01306 TRHDE; pyroglutamyl-peptidase II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671576.1 True 4893 mRNA 0.52 20 26285301 26778380

Neighbor

gene id symbol gene type direction distance location
LOC111193008 NA coding downstream 34354 26245760 ~ 26250947 (-)
LOC103037725 crabp1,crabp1a,LOC105895658,LOC107680155,LOC107673308 coding downstream 787780 25475866 ~ 25497521 (-)
snx33 snx33,LOC107680142 coding downstream 908146 25336717 ~ 25377155 (-)
LOC103033632 LOC103033632 coding downstream 1732938 24548268 ~ 24552363 (-)
apex1 apex1,LOC107658891,LOC107656416,LOC107579619,LOC107725930 coding downstream 1759190 24518610 ~ 24526111 (-)
cpm NA coding upstream 194264 26972644 ~ 27060138 (-)
LOC103028485 LOC108433191 coding upstream 302958 27081338 ~ 27132749 (-)
celf2 celf2,LOC106927059,LOC103370671 coding upstream 398036 27176416 ~ 27386480 (-)
LOC103046202 LOC108432718 coding upstream 1155022 27933402 ~ 27959414 (-)
LOC103045388 LOC108432720 coding upstream 1202888 27981268 ~ 27997241 (-)
G67023 NA non-coding downstream 1661 26283426 ~ 26283640 (-)
G67016 NA non-coding downstream 12386 26271308 ~ 26272915 (-)
LOC111192884 NA non-coding downstream 19330 26264958 ~ 26265971 (-)
G66997 NA non-coding downstream 45229 26239387 ~ 26240072 (-)
G66991 NA non-coding downstream 74115 26210849 ~ 26211186 (-)
G67061 NA non-coding upstream 23944 26802324 ~ 26803940 (-)
G67062 NA non-coding upstream 44396 26822776 ~ 26822992 (-)
G67082 NA non-coding upstream 282450 27060830 ~ 27061123 (-)
G67114 NA non-coding upstream 300880 27079260 ~ 27080989 (-)
G67118 NA non-coding upstream 325638 27104018 ~ 27104678 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 754321 25516515 ~ 25530980 (-)
G66642 NA other downstream 1623399 24660024 ~ 24661902 (-)
G66619 NA other downstream 1777020 24507834 ~ 24508281 (-)
dusp16 dusp16 other downstream 3125122 23053273 ~ 23160179 (-)
G66081 bcap29 other downstream 3993619 22290685 ~ 22291682 (-)
tmem258 NA other upstream 1254321 28032701 ~ 28035961 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other upstream 1342880 28121260 ~ 28132788 (-)
fuk fuk other upstream 2664976 29443356 ~ 29467227 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 3819988 30598368 ~ 30600908 (-)
G67755 NA other upstream 4024330 30802710 ~ 30805567 (-)

Expression


Co-expression Network