LOC103046202 (LOC108432718)


Basic Information

Item Value
gene id LOC103046202
gene name LOC108432718
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 27933402 ~ 27959414 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671615.1
GCGCtcatttgtgtgtatttttctcGTCTTTACCAAAGTTTTTCtgcgtcctcctcctcctcgcctGTCTACTGCAGACTGAATGAAGATGGCGGCCAGTTCAGAGCGGAGTCCCCCTCCCTTTCCCGAGTCCGAGGAGCAGGAACTGGAGCCCGACTTAGAGGATGAGGACAGCGATGAAGGCGCGGATATTTTCACAGGCGGTATGCTCTCCGACGTGGTAATGGATCCTCCTCTTCCTACAAGTGCCAGTGAACCTGCTAAAGACATCTTCAGTGATGCCCCAGCAGATTCCTTCAACGACCCACTGAACAAGACAAGTGCAGAACCAGAGAAGACAGAGAGTACAGGGCTCAGTAAAGCTCAAGTTGTGTCCCTTGTGGACAAGGCAGCTGACGACGAGGATCTGTTCAGTGACCCCTTAGGAGAGTCTGCAGCTGCTCCAGTGACTGACACAAAAAGTGCCCCTTTACTGGACCTCGGTGAGGAACCGCCAAAGAGTGATGTCACCGAGAAGGCAGCGAGTGCGGCTGTGAAGGAGGACGTCAGTGCTGAAGTCCACAAGGCATCTCAAAACGATGTTGTCAGTAAGCCTCAGAAGGACATTTTTGAGGAGCCCCTAAAAGGCACTGTCAAAGAACCGGCCACTGACGTTTTTAGTGAGCCCACAGGCGGCGCTGCAGCTGTAAATAAACCAGCGAGAGCTGACCTGTTTGGTGATGATGACGAAGAGGACCTGTTTAAGGAACCTCTGGGAGCGGTGACTAAAAAACCACAAGTGCCGCTCTTCACCGAGGAACCTAATGACATCTTCACAGAGGCAAAAGCAGGCAGTAAAGCCCCAAGTGATCTCTTCACGGAGGAAACCTTCACAGCCCCATCTGCAGCTGCGGCTGCGAAACCGAGCGTGAACACCGGCTCTAAAACTAACGGGTTGCACTCTGATGAGGAGGATCTGTTTGCAGAGGCCACGGTTGAGCTGTCTTTGGACAGTCCTCATAATGACAAAAGGAAGAGAGAAGCAGCGAAGCCGTCTGTGCCAGCCTCCACACTCTCATCCTCAGCCAGCACCTCCAAACCTCAGCCCAAAACACTAGAAGAGctggaggaggaggagaatgaGGACAAATTTGATTTGAACATTTCCGTTACAAACCCAGAGAAAGTTGGTAATCATGTGCTCGTACTGATGTTTTGATCTAATGCTACCACTCTTGCCCACCCACAGACCACGCTGTCCATGTTCCGCAGTAAGCAGTTTGTGGTGCGCAGACGCTTCAGTGATTTCCTTGGTCTGTATGAGAAACTATCAGAGAAACATGCACAGAATGGATACATtgtaccaccaccaccagagAAGAGCATTCTGGGAATGACCAAAGTGAAGGTTGGTAAAGAAGACCCCTCATCAGCAGAGTTTGTTGAGAGAAGGAGAGCTGCTCTAGAAAGGTACCTCCAGAGAGTCGTGTGTCACCCATCTCTGCTGCAGGACCCAGATGTGAGGGAGTTTTTAGAGAAGGAGGAGTTACCAAGAGCAGTTGGTACCCAAGCGCTTAGTGGAGCTGGATTCCTCAAGATGATCAACAAGGCTACAGATGCAGTGAGCAAGATGACCATAAAAATGAACGAGTCAGATGTTTGGTTTGAGGAGAAACTACAGGAGGTGGAAAGTGAGGACCAGCAGCTGAGGAAGCTGCATGCCATGGTGGACTCCCTTGTTATCCACAGGAAAGagtTGTCTATGAACACAGCAATGTTTGCCAAGAGTGTGGCGATGTTGGGCAGCTCAGAAGACAACACTGCACTATCCAGAGCTCTATCCCAGCTGGCTGAGGTGGAAGATCGTATTGAGCAGCTTCATCAGGACCAGGCCTCCAACGACTTCTTTATCTTTGCTGAGCTTCTTGctgactacatacgtctgctaggGGCTGTCCGGGCCTGCTTTGACCAGCGGATGAAGGCGTGGCAGCGATGGCAGGATGCTCAGAACATGCtgcagaagaaaagagagacgGAAGCAAAACTACTGTGGGCCAACAAACCAGACAAACTGCAGCAGGCCAAGGACGAGATTGTTGAGTGGGAGGCCAAGGTCAGTCAGTATGAGCGAGACTTTGAGAGGGTTTCTGCCACCGTGCGCAAAGAAGTAATCAGATATGAGaaagagaaaactcGGGATTTCAAGAAGCAAATTATTAGATATCTGGAGTCTCTGTTGCAATCACAGCAACAGCTGATAAAGTACTGGGAGGCATTTTTGCCAGAGGCAAAAGCAATCGCATGAGTGTGTCTATATGCAGAtaaacacatgcatacacaggCCTGCTTGAGACTGAGTCTGCCTTTTCTATACACTTTACCTCTTGCCTATAAACCAAGAGTAGAGACGCGTTgcaaagggaaagaaagaaacaatcgttagtttttttgtttgttttttaattaatcaccAGAATCATACAGCTCTTTACTCTAACTGTTGTAttaataattgtatatttttcatttaaccTCCACCTATATTTTCTTATTGACAAAGCTGATGCTAGAGTATGTACATGCATGGTGGTGGGGTAGAGTGGTTATGTCTTCCTCATGTGTatgcaaatgtatttttgttcatttttttgttttgttagtaTTCAGAGATAGTAGGTGCCATTAGTGTGAATGGTATTCACACCACAGAGGAGGCAGACATGTTGACTCATCAGCAGTGCTAATCGTTTACAGTAGGGAGCCCTCTCCTTCCACACTTATGCACTTAACTAGGTTTCACTTCTGTTCTTTTCACTGTATCTATAGCTGCATCTGTGTTGAGAATGCACAGAGGTCGCTCTTTAAATATCtgcccccccaccacccccccccctcctcgtGCCGGGTGGTTAGGCCTAGAACAGtatctgctctgctctgttgAGGGAGAGGTGCCAATGAGAGGATGTTTGCTCACAGTTTAAAGTAATTCTGAGCATCTTCCTGCTAAAATAATTCCaaggaatgaatgaatgaatgaataaacagGTGGTTTACTTGTGTTAGGAAATGTGTAGGtgcttaaaatgaaaatgcaagTAATGGCAGGCCAAAACTGCTTTCTGAGAACAAGGCAGATTCCATCCAATTCCATGGGATGATGTGCATAAtgctgcaagtgtgtgtgtgagtgaccaTGGGCTTTAGTACTTGCATTGCAGTGCATCAGTTTACCAAGTAGccaaaacacaatttttaaaagacagaaaagaaaCATCTCTACTGTACTTCCAACATTataattatagaaaaaaaatactgcatacCTATATTAGAAAACTGCATATCAGTGTCTGTTGGCTTTTAGCTCTCCATACAGGTGACATTCCACATTTTGGATGTTCATGTTCAACAAAAGGTTAATGAGGTAAACAGTATGGTATAGGCCTGAGTTGAGCTTTGttcattaattacacagttaAATCTGCAACTCTACAGCCATTATGCTGAAGCCTTAGCAAAGTTACTGAGGCGACTGCcagtttaaaaaagtttctgtTAAGTATATTTACAAGAGACGTGATGTTTGAGCACTTATTCAGGCAGCCATGACCATGGTTTTccgttaaaaaaatacaaagttttaaaaaatacatatgtctgttttttttaaaaggtacgCTAATCACCCGTAATATTAAAACCACTTGCATTATATTGTGTAGGCCTTACTCTTGCAGTCAAATTATTTCCACAATTTCTGCTATTATTATGGCTCTTCTGTGGAATCAGATGGGCTAGTCAGACAGACACGCCAATCAAGGAGCTTTAGCGACCCAAGGCCCTGCCTGGTGTTTTGGAAATGGAAACTTTGGAGTCTTGTAGTGACTCAGGTCCCTATGCAGGTCCCCATTTTTCTACTCCAACTACATTAACTTAaaaaactgactgttcactcattggttaacacacacatatatctgTATATGACAGATGCCATTGTATGGCTGATCTGTGAAAACAAATGGTTATTGTGATGTAGTTATCTTGACAAAACCTGTTCATAACTTTCTGCTTCTGTAGCTCTTCTATGGGATCAGACAGGCTAGCTTTCTCTACACACATACATCAAGATTCACCACTTGCCCTTTCCTGAAGTGCTTTTGATACATATGAACATGTCCTTCCTGATGTTTTGGAGGTGTTCTGAGCCAGCTGTCTAGCCTTACCATCACAATTTGGTTCTTGTCAAAATGGCTCAGATTTCTTTGGTTTCCCATTTTCCTTCTTCCAGCACACCAACGTAAACAATCGATGTTATTTACTTATTAACCTTGCAGTGGTTTTCAAGTTTTGGCTGATTAATGTATGGCTTTCTTTGTATCACCAATCTCTCAGAATTTTTTGCTAATTCACAGCTGTCAGGTTACTCCCATTCCCCCCTACATTTTTTGTCGTTTCATCAGATATGATTTTGATAATTATGGTATATGTTGTATATCTCTGTAATTGTAATGATTTAATTATGATGTTTGACAGTGAGTCATCAGTTTTCATCAGATGCTGCTGAGCTACCAGCTGACAATGTATTTGAAGAGGAAGATTATCTTCAGATATCTCCTTCCACTGGTTAATAAAGTGGATCAGGTTTTTCCTAGGTTCAGGCTTGTATATCCAGATGATAGTGTCAAGAAAGCATGTAGAACCACAATTCAAGGGTCCTACTCAATGGGTCTGACATGAAAGTCCCTTTAACTGCCATAaatgatgagaaaataaaatgttctttattagactgtatttttttaatcctcCGACCAAGCCAGTAGACATTGTTTAAGTGCACCTTCTGTTGGGCAACACAATAAAGATAGTTTTAAAGAA

Function

NR:

description
PREDICTED: sorting nexin-1-like

GO: NA

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671615.1 True 4866 mRNA 0.44 14 27933402 27959414

Neighbor

gene id symbol gene type direction distance location
celf2 celf2,LOC106927059,LOC103370671 coding downstream 546922 27176416 ~ 27386480 (-)
LOC103028485 LOC108433191 coding downstream 800653 27081338 ~ 27132749 (-)
cpm NA coding downstream 873264 26972644 ~ 27060138 (-)
trhde trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding downstream 1155022 26285301 ~ 26778380 (-)
LOC111193008 NA coding downstream 1682455 26245760 ~ 26250947 (-)
LOC103045388 LOC108432720 coding upstream 21854 27981268 ~ 27997241 (-)
LOC103045078 cracr2b,LOC108432657 coding upstream 41316 28000730 ~ 28024914 (-)
ap3b2 ap3b2 coding upstream 78446 28037860 ~ 28109031 (-)
psma4 psma4,LOC107680153,LOC107562288,LOC107560014 coding upstream 263692 28223106 ~ 28229332 (-)
chrm2 chrm2,LOC108427087,LOC107561244,LOC107658987,LOC107707993,LOC107568718,LOC107662193 coding upstream 523714 28483128 ~ 28580685 (-)
G67228 NA non-coding downstream 39618 27893508 ~ 27893784 (-)
G67165 NA non-coding downstream 247962 27685026 ~ 27685440 (-)
G67154 NA non-coding downstream 341634 27591297 ~ 27591768 (-)
G67151 NA non-coding downstream 450560 27482499 ~ 27482842 (-)
G67150 NA non-coding downstream 468913 27464256 ~ 27464489 (-)
G67254 oaz2,LOC108432726,LOC108275215 non-coding upstream 257457 28216871 ~ 28220848 (-)
G67294 NA non-coding upstream 440370 28399784 ~ 28466660 (-)
G67300 NA non-coding upstream 484473 28443887 ~ 28457328 (-)
G67310 NA non-coding upstream 693545 28652959 ~ 28653504 (-)
G67321 NA non-coding upstream 767169 28726583 ~ 28729171 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 2402422 25516515 ~ 25530980 (-)
G66642 NA other downstream 3271500 24660024 ~ 24661902 (-)
G66619 NA other downstream 3425121 24507834 ~ 24508281 (-)
dusp16 dusp16 other downstream 4773223 23053273 ~ 23160179 (-)
G66081 bcap29 other downstream 5641720 22290685 ~ 22291682 (-)
tmem258 NA other upstream 73287 28032701 ~ 28035961 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other upstream 161846 28121260 ~ 28132788 (-)
fuk fuk other upstream 1483942 29443356 ~ 29467227 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 2638954 30598368 ~ 30600908 (-)
G67755 NA other upstream 2843296 30802710 ~ 30805567 (-)

Expression


Co-expression Network