LOC103031543



Basic Information


Item Value
gene id LOC103031543
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29639675 ~ 29656393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022671635.1
CAGCAGCTCCggccctgaaaaaaaaattggaaaactGCACGTGGTGAGAGAAGCCCTGATAGAAATGAGTgaagaaatgtgtaaaatGTGCTGAAAGGCTTAGAGTATGACTCAGAGAGTGTAAGCCTGTGTGGACGTTCCGTACCTGTGCAAGTTCCTGCAGCAGGTTAGCATAAGTGGCGTGACAGGAACTTCAAACTCCAGTACAGCTACTCAGGTGTCCCACTGCAACCATGACTGAGAAAGAGTACTGCAGGATGGGAAGCCTGGATGAAATCCCCTTCCAGATTCCCCTGGGTTCTTTGGATGAGCCACTGGGAAAGATGAATCTAGTCACCGACCCAGAGATCAATTTATCAGACTACGACCAAATAATAAAGGATACAAAGTATGAGTTCTCTTTGGAGAACTGGATTCTCTATGGGGTAAATGCTGTGTCTAAGGACCGCGGTAAACCACTGTGTGCGGTTCCATCCTGTCCGCCATACTGGCTGCTTTTAAGCAGCCCTAGGCAGAGGCCTGGCACACGCCACCGCAGCAAAGAACTGAGTGAGGAAGGGCCACGGGCACGGAGCCTGAGCCTGAGTGAAGCGGGGGAACCCCAAAGACGACGCCAGCCACGTTCTGTTCACTTTCTTATGGCAGACTCTGAGTGTGAGGGTGCAGGCTACCGTGAGGATGACGAGGGATCCTCTAGTGAGGAAGAGACCCCAGCTTTGCGCTCTCGCAGTGCGGAGAGACCACGCAGCTCCGGAACAAAGCGCCAGGCATCGCTGCTCCGAGAAGTCCAGCGGCGCTCGGCCTCTCAGCTTTCACTGCTCAGCTCGCCCAGTCCCCCAGCAAGCCAGACCAAGAAGAGCTCCACAGGCAGCCCACATGCCCAGAGGTCCTCACGCAAGAAAACCAGCTCTGGGGTCTCCGGTGGGAAAAggcactcacttacacacaagCAGACCAATGTACACTCCCCCCTTCAGCAAAGACCCTCTTCAGCTGGCCCTCAGCCTTCTACCCGCCAACACAAGCCTGCTCTGCAGGCTCTTCGTCCACGCAGTTCTCACGGAGGCCGTAGTTCGGGCGTGGACTCTTCAGTGGAGTTGCTCTATGCTCTGAgcaaggaagagagagagctgctggAGACCATCATTGCTCAGGGATACACACCCAACTCTGCCATTCTTGCTCTGCAGCGGACTGGTCCTCGTAGTGCTGAACAGATTCTAAACTATCTGCTGGCCTGTGATCGTCTGTGTGCTCTGGGTTATGAAAAGACTCAGGTGGAGGACGCTCTGGAAATGTTTCAGAACTGTGAGAGCAAGGCTGCAGAGTTTTTGCGGTTGCTGGCTCAGTTCCGTGAGATGGGCTTCCAGCAGAGCACCATTAAAGAGGTTCTGCTGTTACACGAGAACCACCGAGAGAGAGCGCTGGAGGAACTCATGACTCGTGTTGCCTGAACTTCTAATACCATGGAGAGATTTCGCAGCTCCAGC
>XM_022671636.1
CGTTGTGTGGTAACTACTGGTGGTTCTCCAGTTTGCCAAACGTCGCCCTGAAACATAAAGCTCATTACGCTTCTGACGGAGACTAAAGGAGTCTGCAGGTGCTGAAAGGCTTAGAGTATGACTCAGAGAGTGTAAGCCTGTGTGGACGTTCCGTACCTGTGCAAGTTCCTGCAGCAGGTTAGCATAAGTGGCGTGACAGGAACTTCAAACTCCAGTACAGCTACTCAGGTGTCCCACTGCAACCATGACTGAGAAAGAGTACTGCAGGATGGGAAGCCTGGATGAAATCCCCTTCCAGATTCCCCTGGGTTCTTTGGATGAGCCACTGGGAAAGATGAATCTAGTCACCGACCCAGAGATCAATTTATCAGACTACGACCAAATAATAAAGGATACAAAGTATGAGTTCTCTTTGGAGAACTGGATTCTCTATGGGGTAAATGCTGTGTCTAAGGACCGCGGTAAACCACTGTGTGCGGTTCCATCCTGTCCGCCATACTGGCTGCTTTTAAGCAGCCCTAGGCAGAGGCCTGGCACACGCCACCGCAGCAAAGAACTGAGTGAGGAAGGGCCACGGGCACGGAGCCTGAGCCTGAGTGAAGCGGGGGAACCCCAAAGACGACGCCAGCCACGTTCTGTTCACTTTCTTATGGCAGACTCTGAGTGTGAGGGTGCAGGCTACCGTGAGGATGACGAGGGATCCTCTAGTGAGGAAGAGACCCCAGCTTTGCGCTCTCGCAGTGCGGAGAGACCACGCAGCTCCGGAACAAAGCGCCAGGCATCGCTGCTCCGAGAAGTCCAGCGGCGCTCGGCCTCTCAGCTTTCACTGCTCAGCTCGCCCAGTCCCCCAGCAAGCCAGACCAAGAAGAGCTCCACAGGCAGCCCACATGCCCAGAGGTCCTCACGCAAGAAAACCAGCTCTGGGGTCTCCGGTGGGAAAAggcactcacttacacacaagCAGACCAATGTACACTCCCCCCTTCAGCAAAGACCCTCTTCAGCTGGCCCTCAGCCTTCTACCCGCCAACACAAGCCTGCTCTGCAGGCTCTTCGTCCACGCAGTTCTCACGGAGGCCGTAGTTCGGGCGTGGACTCTTCAGTGGAGTTGCTCTATGCTCTGAgcaaggaagagagagagctgctggAGACCATCATTGCTCAGGGATACACACCCAACTCTGCCATTCTTGCTCTGCAGCGGACTGGTCCTCGTAGTGCTGAACAGATTCTAAACTATCTGCTGGCCTGTGATCGTCTGTGTGCTCTGGGTTATGAAAAGACTCAGGTGGAGGACGCTCTGGAAATGTTTCAGAACTGTGAGAGCAAGGCTGCAGAGTTTTTGCGGTTGCTGGCTCAGTTCCGTGAGATGGGCTTCCAGCAGAGCACCATTAAAGAGGTTCTGCTGTTACACGAGAACCACCGAGAGAGAGCGCTGGAGGAACTCATGACTCGTGTTGCCTGAACTTCTAATACCATGGAGAGATTTCGCAGCTCCAGC
>XM_022671637.1
TGATGCTCCTCCAGCCAGTCCAGGTAGTCCAGCAGCTCCggccctgaaaaaaaaattggaaaactGCACGTGGTGCTGAAAGGCTTAGAGTATGACTCAGAGAGTGTAAGCCTGTGTGGACGTTCCGTACCTGTGCAAGTTCCTGCAGCAGGTTAGCATAAGTGGCGTGACAGGAACTTCAAACTCCAGTACAGCTACTCAGGTGTCCCACTGCAACCATGACTGAGAAAGAGTACTGCAGGATGGGAAGCCTGGATGAAATCCCCTTCCAGATTCCCCTGGGTTCTTTGGATGAGCCACTGGGAAAGATGAATCTAGTCACCGACCCAGAGATCAATTTATCAGACTACGACCAAATAATAAAGGATACAAAGTATGAGTTCTCTTTGGAGAACTGGATTCTCTATGGGGTAAATGCTGTGTCTAAGGACCGCGGTAAACCACTGTGTGCGGTTCCATCCTGTCCGCCATACTGGCTGCTTTTAAGCAGCCCTAGGCAGAGGCCTGGCACACGCCACCGCAGCAAAGAACTGAGTGAGGAAGGGCCACGGGCACGGAGCCTGAGCCTGAGTGAAGCGGGGGAACCCCAAAGACGACGCCAGCCACGTTCTGTTCACTTTCTTATGGCAGACTCTGAGTGTGAGGGTGCAGGCTACCGTGAGGATGACGAGGGATCCTCTAGTGAGGAAGAGACCCCAGCTTTGCGCTCTCGCAGTGCGGAGAGACCACGCAGCTCCGGAACAAAGCGCCAGGCATCGCTGCTCCGAGAAGTCCAGCGGCGCTCGGCCTCTCAGCTTTCACTGCTCAGCTCGCCCAGTCCCCCAGCAAGCCAGACCAAGAAGAGCTCCACAGGCAGCCCACATGCCCAGAGGTCCTCACGCAAGAAAACCAGCTCTGGGGTCTCCGGTGGGAAAAggcactcacttacacacaagCAGACCAATGTACACTCCCCCCTTCAGCAAAGACCCTCTTCAGCTGGCCCTCAGCCTTCTACCCGCCAACACAAGCCTGCTCTGCAGGCTCTTCGTCCACGCAGTTCTCACGGAGGCCGTAGTTCGGGCGTGGACTCTTCAGTGGAGTTGCTCTATGCTCTGAgcaaggaagagagagagctgctggAGACCATCATTGCTCAGGGATACACACCCAACTCTGCCATTCTTGCTCTGCAGCGGACTGGTCCTCGTAGTGCTGAACAGATTCTAAACTATCTGCTGGCCTGTGATCGTCTGTGTGCTCTGGGTTATGAAAAGACTCAGGTGGAGGACGCTCTGGAAATGTTTCAGAACTGTGAGAGCAAGGCTGCAGAGTTTTTGCGGTTGCTGGCTCAGTTCCGTGAGATGGGCTTCCAGCAGAGCACCATTAAAGAGGTTCTGCTGTTACACGAGAACCACCGAGAGAGAGCGCTGGAGGAACTCATGACTCGTGTTGCCTGAACTTCTAATACCATGGAGAGATTTCGCAGCTCCAGC

Function


GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0052652 cyclic purine nucleotide metabolic process biological_process
GO:0046068 cGMP metabolic process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009187 cyclic nucleotide metabolic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0030249 guanylate cyclase regulator activity molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008047 enzyme activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0010851 cyclase regulator activity molecular_function
GO:0010853 cyclase activator activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko04744 Phototransduction

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022671635.1 False 1490 mRNA 0.54 7 29639675 29656364
XM_022671636.1 True 1501 mRNA 0.54 7 29639675 29653902
XM_022671637.1 False 1475 mRNA 0.54 7 29639675 29656393

Neighbor


gene id symbol gene type direction distance location
LOC103032078 LOC108437708,LOC108275412 coding downstream 2945 29623051 ~ 29636730 (-)
syt12 syt12,LOC107680125,LOC107573158,LOC107559999,LOC107673296 coding downstream 20607 29595489 ~ 29619068 (-)
cat cat,LOC107573156 coding downstream 47416 29580320 ~ 29592259 (-)
LOC103033237 ifitm5,LOC103033237,LOC108438128,LOC107559973,LOC107736613,LOC107577508,LOC107680123,LOC108274514 coding downstream 89314 29546603 ~ 29550361 (-)
LOC103033560 LOC108438141 coding downstream 94298 29529697 ~ 29545377 (-)
LOC103022709 peak1 coding upstream 8952 29665345 ~ 29812561 (-)
hmg20a hmg20a,LOC107560003,LOC107727687 coding upstream 177689 29834082 ~ 29844607 (-)
LOC103043802 impdh1b,LOC108432555,LOC104968094,LOC107725554 coding upstream 580536 30236929 ~ 30281397 (-)
irf5 irf5 coding upstream 681144 30337537 ~ 30371368 (-)
LOC103025989 LOC108432518 coding upstream 720788 30377181 ~ 30406547 (-)
G67517 NA non-coding downstream 71917 29566759 ~ 29567758 (-)
G67500 NA non-coding downstream 136364 29501604 ~ 29503311 (-)
G67437 NA non-coding downstream 146616 29438236 ~ 29493059 (-)
G67436 commd9 non-coding downstream 198247 29440633 ~ 29441428 (-)
G67339 NA non-coding downstream 482481 29155695 ~ 29157194 (-)
G67529 NA non-coding upstream 5620 29662013 ~ 29662676 (-)
G67537 NA non-coding upstream 62836 29719229 ~ 29724088 (-)
G67566 NA non-coding upstream 279312 29935705 ~ 29935944 (-)
G67572 NA non-coding upstream 383872 30040265 ~ 30040488 (-)
G67575 NA non-coding upstream 408966 30065359 ~ 30065694 (-)
fuk fuk other downstream 172448 29443356 ~ 29467227 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 1506887 28121260 ~ 28132788 (-)
tmem258 NA other downstream 1603714 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 4108695 25516515 ~ 25530980 (-)
G66642 NA other downstream 4977773 24660024 ~ 24661902 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 941975 30598368 ~ 30600908 (-)
G67755 NA other upstream 1146317 30802710 ~ 30805567 (-)
G67830 NA other upstream 1319484 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 1424387 31080780 ~ 31091017 (-)
G67863 NA other upstream 1437353 31093746 ~ 31149733 (-)

Expression



Co-expression Network