irf5 (irf5)


Basic Information

Item Value
gene id irf5
gene name irf5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30337537 ~ 30371368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671648.1
atgggtagcataactcgacggAACACCGGTcagacagtcagtcagtcagtcaggcGGAGGGGCTCCTCTCTCTCAGTTCTTCTGAATGTGTGAAAAAGCGCGGAGACGCTGCTAAAGTGTGGAAACCTCGCCGCTATGTGTCTTTTCTGGATCAGGTAGGAGGAATTTACAGACTCACCTGCGGCTCCAtgtgtcctcctcctcctcctgctgcgtGTTTGTTTGTGGAGAATCTGCTGCTGAAGTTCGTCTGAGGAGTGTTCACCTCTCGCTGCTCAGGCTCTGTCACACCACTTTTCTAAAGCACCTAAAGGGAACCACCATGAGCATCCAGCCCCGGAGGATCCGCCTTAAGCCTTGGCTGCTGACCCAGGTGAACAGTGGGAAATACCCTGGCCTGCACTGGCTCAATAAGGAGCGGCGCTTGTTCCAGATCCCCTGGAGACATGCCACACGCCACCTACCTGCCCAGGAGGAAGAAAACACTATATTCAGGGCCTGGGCATTAGAGACAGGGAAGTATCAGGAGGGTGTGGACGAGCCAGATCCAGCTAAATGGAAGGCCAACCTCCGCTGTGCCCTCAACAAGAGCCGAGAATTCAACCTGAAATATGACGGCACCAAAGAAACCCCCATGCAGCCTTTCAAAATCTATGAGGTGTGCGATCAACCAGTCAATGGAGATGGAGGCGAGGATGATGAGGAAGAGcTGGCAAACTTCGAGCAACTATCCATCAATCCTCGAATTGGTGAACCTCCAAGCTACTCTGCATTCTCAGCAAACCCAGTGGATCCGTTCCTCCAACCTATCATACCTCCTGAGTTCTCCGGACACAGCCATATAGCTGCTACTGTAAAGCAGGAGGAATATATTCTTGGCGACGTTCTTCAAAATGGACTAGGGATGGGTCCTGGGGTCATGCCTCCACCTGTTGTCCCACATGCAGTCAATATTCCAGGGGCCGTGGTGGACAGTCCTATGCAGGAAGTGCACCCGCAAGCAGAGAGCCAGGTGCAGCCGTGTATCTCCGACCTGTTGAGCAGTCCTCATATGCTGCCTTTAACTGACCTGGACCTGAAGTTCCAGTACCGGGGCCGGTCAGTTGGTTCTCTGACGGTCAGCAATCCTCAGGGATGTCGGCTCTACTATGGTAATCTAGCTCCTACACCGGAGCAGGTGGAGCTGTTTGGGCCAGTCACTCTGCATCAGGTGCTTTTTCCCGGAACCGCTGATATCCAGAACGAGAAGCAGAGGTTCTATACAGAGCACCTGCTGGATGTGATGGATAGGGGGCTGATCCTGGAGATCCGAGGGCAGGACATCTATGCTGTGCGTCTGTGTCAGTGTAAAGTGTTTTGGTCTGGGCCAGGGGTGCATGAGGAGGGCCCACCTAACCCCATGGAGAGGGAGCGCAAAATTAACGTGTTCAGCCTCAACAATTTCCTGCAGGGATTAATCTTGTACCAGAAAGGGGAGGCGCCCAGCCCTCCTCCCTTTGAAATTTACTTCTGCTTTGGGGAGGACTGGCCTGACCGTAAGCCTAAAGAGAAGAAGCTCATCGTTGTCCAGGTGGTGCCTGTGGTCGCAAGGATCCTCACAGAGATGTTCTCAGGCGAGCTCTCCTGGTCCACAGACAGCATCCGTCTGCAGATCTCCAACCCTGACCTGAAAGACCAGACTGTGGAGCAGTTTAAGGAGCTTCACAGACTCCTGCAGAATCAACACGCTCAGGGCACATGGCATCAAAACCTCCAGTAACTCAAGACTGATCACCCAGGTTCCCTTTAGCAACACCCTGAATCTATCAGCTGCTGCAGAAGGAATGtagctgttttttgtttgttgcaaATACAACATGATCGTGATCATGAACAGGCGCTCGTGTTCCTGTATGGTTTTAACTACATTTGGTTgctcaaatcacatttttttgttttgtttatcagAAGCTCCCATGGATGCTGTTCAAGGGAGTGAAATTAAAAAGGTTTTGGGCTGCTAATAGTCACAGCTGCATCAGGGTTTAGCCGCATTGTGTTAATACTGTGTCATCAGCACTCGGACTCAGACGTGCTTTTGCTCATTTGATTCTAGCTGGACAGCCATCAAGTCTTGTCTTTTATCACATTGAGGAATATGGGTAGGTGCTCACAGCAAATAAAAACCACTAACATTTCCATTCAGACTATCAGACCGACTGCTTTTCATACGTTTAAGTCTAAGTCTGGCCTCAATCAGTATAAAGCGGGACTCAAGTCTCCAACACTAGGGTTAATCTTTGTCTGGGAGCTTCATCAGTATATTGTGCATCACTGCCACTAACGTCTTGTCCATGCTCTTGCAAAAAAGCCCTTTGTTTTTACCCcaacataaaatgtatttgtatatgtcttttttttagcttaaattTGTTCTTTTAAACATTGTATTTCAATAAATACCGCAGCAGTATTTTAGGGTGCAGGCATCACTCGGTTGATGCTGATCTGTAATTCAGTTACTTCTTTGCTTTCCAGcgttaattgtttttaatttctttccCGCAGTAAatgttttgtcttttaaattTGAACTGAATGTACAGAGAAACATATCCTGAACATACACTATTACCACTTTTAAGCTCAGTGTCATGCAATATGTGGAAAGTAAGCCATATGTAATGTCAAATGATGGTAATATAACATAACATTCTTTTCATTAAATGTAGTATCATTTTTACTAACAGTTGACTGGGATTGTCATTAAAAGAAACAGataaaatg

Function

symbol description
irf5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cytokine-mediated signaling pathway; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in herpes simplex; inflammatory bowel disease 14; multiple sclerosis; rheumatoid arthritis; and systemic lupus erythematosus. Orthologous to human IRF5 (interferon regulatory factor 5).

NR:

description
PREDICTED: interferon regulatory factor 6-like

GO: NA

KEGG:

id description
K09446 IRF5; interferon regulatory factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671648.1 True 2766 mRNA 0.48 10 30337537 30371368

Neighbor

gene id symbol gene type direction distance location
LOC103043802 impdh1b,LOC108432555,LOC104968094,LOC107725554 coding downstream 56140 30236929 ~ 30281397 (-)
hmg20a hmg20a,LOC107560003,LOC107727687 coding downstream 492930 29834082 ~ 29844607 (-)
LOC103022709 peak1 coding downstream 524976 29665345 ~ 29812561 (-)
LOC103031543 NA coding downstream 681144 29639675 ~ 29656393 (-)
LOC103032078 LOC108437708,LOC108275412 coding downstream 700807 29623051 ~ 29636730 (-)
LOC103025989 LOC108432518 coding upstream 5813 30377181 ~ 30406547 (-)
LOC103025686 drd4-rs,LOC108432516,LOC107591318,LOC107738833,LOC107557292,LOC107732971,LOC107699035 coding upstream 55091 30426459 ~ 30473893 (-)
LOC103041847 arf5,zgc:77650,LOC105916194,LOC106511461,LOC105888566,LOC105020167,LOC106609140 coding upstream 235104 30606472 ~ 30611944 (-)
dennd6b dennd6b,LOC107732989,LOC107738816 coding upstream 253256 30624624 ~ 30642727 (-)
fam3c fam3c,LOC106576502 coding upstream 299966 30671334 ~ 30679232 (-)
G67640 NA non-coding downstream 9411 30317890 ~ 30328126 (-)
G67629 NA non-coding downstream 59949 30277163 ~ 30277588 (-)
G67628 LOC108432554 non-coding downstream 100822 30233873 ~ 30236715 (-)
G67575 NA non-coding downstream 271843 30065359 ~ 30065694 (-)
G67572 NA non-coding downstream 297049 30040265 ~ 30040488 (-)
G67672 NA non-coding upstream 53216 30424584 ~ 30425454 (-)
G67674 NA non-coding upstream 56590 30427958 ~ 30428487 (-)
G67675 NA non-coding upstream 75372 30446740 ~ 30446942 (-)
G67676 NA non-coding upstream 76189 30447557 ~ 30468713 (-)
G67679 NA non-coding upstream 114284 30485652 ~ 30485914 (-)
fuk fuk other downstream 870310 29443356 ~ 29467227 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other downstream 2204749 28121260 ~ 28132788 (-)
tmem258 NA other downstream 2301576 28032701 ~ 28035961 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 4806557 25516515 ~ 25530980 (-)
G66642 NA other downstream 5675635 24660024 ~ 24661902 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 227000 30598368 ~ 30600908 (-)
G67755 NA other upstream 431342 30802710 ~ 30805567 (-)
G67830 NA other upstream 604509 30975877 ~ 30992883 (-)
tmem60 tmem60 other upstream 709412 31080780 ~ 31091017 (-)
G67863 NA other upstream 722378 31093746 ~ 31149733 (-)

Expression


Co-expression Network