CI01000010_04010515_04020837 (ST6GALNAC5B)


Basic Information

Item Value
gene id CI01000010_04010515_04020837
gene name ST6GALNAC5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4010515 ~ 4020898 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04010515_04020837.mRNA
CGTCATGGGATCATATTGATTGGTTTTGTGACCGTGCTTACAAGCTTATTAATCCTGTACAACAGCAGTTCTACCGACACACCAGAAGATCAGATGCAGTCAGACGGACATCAGATGAACGTTTTAAGACGGCAAACATCCCACTTAGAAGGGTACAGCAGCATCATTGAACATAAGCCTCTTAGGATGCATTGCAGAAGTTGTGCCTTGGTGACCAGCTCTGGTCACATGACAGGAAGTGATCGAGGTGCAGAGATTGATAGCAAGGAATGCGTCATCCGTATGAACGATGCCCCGACAAAAGGCTACCAGAGGGATGTGGGCCAGCGGACGAGCCTGCGTGTGGTCGCACATTCCAGCATGCAACGTGTGCTACGAAACCGCCATGAGCTACTCAACTCCAGCCAGGACACATTCTTTATCTTCTGGGGGCCCGGAAACTATATGCGACGAGACGGTAAAGGCCTTGTCTACAACAACCTGCGCCTGATGAAGCAGATGATGCCTAAACTACAGGTGTATGTTATCTCACGGTTGAAGATGTTGCATTTTGATGAGCTTTTTAAGAAGGAAACGGGAAAAGACAGGAAAAGGTCGAATTCATGGCTCAGCACTGGTTGGTTCACCATGGCAATCGCTATGGAGGTTTGTGACAGAATTGACGTCTATGGCATGATTCCTCCTGAGTTCTGCAAGTCTCCCAAGCCCTCAGTGCCGTATCACTACTACGAGCCTGCGGGGTCGGATGAATGCACCATGTATCTCTCCCATGAGCAAGGCCAGCATGGCAGTCACCATCGTTTCATTACAGAGAAACATGTCTTTGCCAACTGGGCACGTATGTTCAACATACACTTCTATCAGCCTGACTGGAGACCGACGCCAGTCGCAAAGAACAGCACAGACTCCTGAAGTTCGGATGTTTTTAGGACTCAGAGCCTGTTGGTGACAGAGTGTGTCCTATTGAGGACAA

Function

symbol description
st6galnac5b Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).

NR:

description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04010515_04020837.mRNA True 973 mRNA 0.49 4 4010515 4020898

Neighbor

gene id symbol gene type direction distance location
CI01000010_03952874_03957173 NA coding upstream 53271 3952874 ~ 3957244 (+)
CI01000010_03920171_03935066 TNNI3K coding upstream 74656 3920171 ~ 3935859 (+)
CI01000010_03915860_03918633 FPGT coding upstream 91378 3915860 ~ 3919137 (+)
CI01000010_03902240_03911029 ACOT11 coding upstream 99060 3902106 ~ 3911455 (+)
CI01000010_03882122_03883663 NA coding upstream 126753 3882122 ~ 3883762 (+)
CI01000010_04025764_04026729 NA coding downstream 4463 4025361 ~ 4027266 (+)
CI01000010_04046204_04137642 PRKCZ coding downstream 25306 4046204 ~ 4137642 (+)
CI01000010_04165584_04232583 SKIA, SKI coding downstream 144686 4165584 ~ 4232583 (+)
CI01000010_04368541_04374080 NA coding downstream 347573 4368471 ~ 4374174 (+)
CI01000010_04377762_04378990 MRPS36 coding downstream 356249 4377147 ~ 4379082 (+)
G62871 NA non-coding upstream 29029 3966589 ~ 3981486 (+)
G62869 NA non-coding upstream 45375 3964653 ~ 3965140 (+)
G62868 NA non-coding upstream 46352 3963748 ~ 3964163 (+)
G62788 NA non-coding upstream 164074 3818656 ~ 3846441 (+)
G62791 NA non-coding upstream 194010 3816031 ~ 3816505 (+)
G62893 NA non-coding downstream 33697 4054595 ~ 4061190 (+)
G62895 NA non-coding downstream 71147 4092045 ~ 4095387 (+)
G62923 NA non-coding downstream 270187 4291085 ~ 4291311 (+)
G62925 NA non-coding downstream 276463 4297361 ~ 4297627 (+)
G62926 NA non-coding downstream 278795 4299693 ~ 4299922 (+)
G62856 NA other upstream 70570 3937757 ~ 3939945 (+)
G62838 NA other upstream 116722 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 679329 3313695 ~ 3347796 (+)
CI01000010_03197380_03199958 NA other upstream 810607 3197380 ~ 3200044 (+)
CI01000010_00946586_00947327 NA other upstream 3062971 945182 ~ 947577 (+)
G62983 NA other downstream 427274 4448172 ~ 4449327 (+)
CI01000010_04640858_04683752 OSBPL9 other downstream 619943 4640516 ~ 4683778 (+)
G63403 NA other downstream 1674547 5695445 ~ 5707085 (+)
G63405 NA other downstream 1687073 5707971 ~ 5717250 (+)
CI01000010_05789479_05790006 NA other downstream 1736055 5788332 ~ 5790204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036338 st6galnac5b coding NC_007119.7 CM002892.2 17800380 ~ 17822259 (-)