LOC107197604


Basic Information

Item Value
gene id LOC107197604
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8370763 ~ 8374695 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518662.2
CACAACGCAGCTTGCCATCCAATCAGATTTCCCCTGTTTTCGCCCTCGGCAGGTCTGCAGCGGGTGAGCGTGAGGCACGGTTGCTTTAGACGCGGAGCTAGTGACTGTGTTCTGAGCTGATGCAGAGTCGCCATTTTGTTGTTTCTAATTGATGGGAAATGGCAGCAAACTTTCCAAATTCAAGATGGCGAACTAACCCGTGGCTACGTGTCCCAGAGGACGTTGAGTCCCCGACCAAAAAAGATGTCTGCAGCGTGAGCATGCAAGCAGCCCTGCAGACAGACcgcagaaaagaaaaaagcaagcacttgaaacacacgcacacataaaCACTGGTCTACCCAGGTAGTGAAGACTTGAACACTATATTTCTGACACAATGGGACAATTTTACACAAAGGGAAAGGAcgaaaaagaaacagaacatTGAGcattaaccaaaaaaaagaaaggagaaaagaCTATTGgttctttttaatattaaaagactTGAAATTTTGAacaattaagtttattttttttattactaaaacTGACCTAAATACTGCATTTGTGTACTTttggttttttttctctgaacaTTCGTGccaatttattattttgcatATGCATAGAGCCCAATTGAATTAATACCCAATTTTACACCCCCTCCATTtaatatcttatttattttgttttatttgcctACCCTGACTTACACTTACTTGTTCAGAAATTCATAATTGTATGTTGAAATCTGTCTCTATTGTATGTTGCATTTCTGCCCAAGATcttgtttttagcatttttacatAGAGAGGTGTTGATACTGGTACAAAATTTGAGAAAAAACAACCCAAATCTATGGTTTACATTCCCTATAGTAAGCACCATTGTGATATAATAATTCATAGAGACTGTGAGTTAGCTAATGCAGCTACTGCATTATGTACACTTGCTACAGCTGTATTACTGGTTAGGAAACTCTGATTTCACCTTGATTCAATTGTTTGGTTTCATTTAGCTTCTTGTTTGAGTTTGAGGTTTggccaatgaaactgaaacacctggttttagaacaTCTGGTtgtagaccacaataattgattgtcccgactgaca

Function

GO:

id name namespace
GO:0000266 mitochondrial fission biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_001518662.2 True 1100 lncRNA 0.38 3 8370763 8374695

Neighbor

gene id symbol gene type direction distance location
LOC103021322 LOC108425378,LOC108279462 coding upstream 449539 7820355 ~ 7921224 (+)
smkr1 NA coding upstream 600520 7766846 ~ 7770243 (+)
LOC103023836 strip2 coding upstream 607640 7703112 ~ 7763123 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding upstream 683216 7633393 ~ 7687547 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding upstream 739385 7620814 ~ 7631378 (+)
ckap4 NA coding downstream 53857 8428552 ~ 8431990 (+)
LOC107197608 LOC107197608,LOC108425361 coding downstream 135820 8510515 ~ 8516534 (+)
LOC103044524 NA coding downstream 143285 8517980 ~ 8525037 (+)
sapcd1 NA coding downstream 192602 8567297 ~ 8572672 (+)
LOC103045143 LOC108425356,LOC108425352,LOC108280014,LOC103363517,LOC107719870,LOC104927640,LOC107699203 coding downstream 414660 8789355 ~ 8882696 (+)
G62710 NA non-coding upstream 419311 7949838 ~ 7951452 (+)
G62685 LOC108425379,LOC108280009 non-coding upstream 583895 7770742 ~ 7786868 (+)
G62656 lyrm5a,etfrf1,lyrm5,LOC103046475 non-coding upstream 751367 7617543 ~ 7619396 (+)
G62644 utp20,LOC107725898 non-coding upstream 768496 7598566 ~ 7602267 (+)
G62628 utp20,LOC107710084 non-coding upstream 811953 7556771 ~ 7558810 (+)
G62807 NA non-coding downstream 59041 8433736 ~ 8434382 (+)
G62810 arfgap3 non-coding downstream 76797 8451492 ~ 8455911 (+)
G62805 pacsin2,LOC103038884,LOC108279716 non-coding downstream 89432 8464127 ~ 8496289 (+)
G62873 NA non-coding downstream 150873 8525568 ~ 8525767 (+)
G62902 NA non-coding downstream 239523 8614218 ~ 8614523 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 1515001 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 2376769 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 2403028 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 2604978 5740555 ~ 5765785 (+)
G61575 NA other upstream 5066765 3296546 ~ 3303998 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 27145 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 151523 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 1056804 9431499 ~ 9440564 (+)
G63051 NA other downstream 1271884 9646579 ~ 9650087 (+)
G63432 NA other downstream 4093355 12468050 ~ 12468902 (+)

Expression


Co-expression Network