LOC111192864


Basic Information

Item Value
gene id LOC111192864
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3712242 ~ 3713423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650147.1
TAGGCATTCCCTGTTGAAGCTATTGAGACCAAAATCTGTATCTACTTTGCTCTATATGCTTTTTATATAGTGAACTTGACTGAGAGAGCCTGCAGAGAACTTGACTGAGAGAGGCATTCCCTGTTGAAGCTATTGAGACCAAAATCTGTATCTACTTTGCTCTATATGCTTTTTATATAGTGAACTTGACTGAGAGAGCCTGCAGAGAACTTGACTGAGAGAGCCTGCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650147.1 True 232 lncRNA 0.41 3 3712242 3713423

Neighbor

gene id symbol gene type direction distance location
cfap54 NA coding upstream 17318 3656162 ~ 3694924 (+)
mcat mcat,LOC107553884,LOC107732994 coding upstream 60591 3645317 ~ 3651651 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding upstream 69819 3562745 ~ 3642423 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding upstream 338491 3342719 ~ 3373751 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 419649 3267964 ~ 3292593 (+)
LOC103031106 LOC108438797 coding downstream 133620 3847043 ~ 3853727 (+)
LOC103029111 NA coding downstream 224068 3937491 ~ 3949734 (+)
atxn10 atxn10 coding downstream 243239 3956662 ~ 3968956 (+)
LOC103027723 ppara coding downstream 334819 4048242 ~ 4074563 (+)
mcm10 NA coding downstream 370260 4083683 ~ 4099389 (+)
G61657 rint1 non-coding upstream 14461 3695234 ~ 3697781 (+)
G61607 NA non-coding upstream 314470 3394516 ~ 3397772 (+)
G61608 NA non-coding upstream 316207 3394779 ~ 3396035 (+)
G61560 NA non-coding upstream 445355 3266308 ~ 3266887 (+)
G61558 NA non-coding upstream 467113 3244857 ~ 3245129 (+)
LOC111192865 NA non-coding downstream 134 3713557 ~ 3714248 (+)
LOC103028258 NA non-coding downstream 297961 4011384 ~ 4044308 (+)
G61804 NA non-coding downstream 343016 4056439 ~ 4056959 (+)
G61815 NA non-coding downstream 409259 4122682 ~ 4122963 (+)
G61790 NA non-coding downstream 416894 4130317 ~ 4131090 (+)
G61575 NA other upstream 408244 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 1776743 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 1903312 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2230824 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2668926 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 2027132 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 2068668 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2268813 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 3137807 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4688417 8401840 ~ 8415039 (+)

Expression


Co-expression Network