LOC111192869


Basic Information

Item Value
gene id LOC111192869
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7344924 ~ 7371665 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650151.1
AGTGACATTTTAGCTGCCTCATGCTGGAGAGAGGAGGCGCAGGATAGAAGAATGTAAAGGCGCTGTTTAGTTTCTTCTCCTTcctccccaccgcctccagtttGGTCCCGGCGGCTGCCTGGTAATTGGCTCCGCCCTCTGCCTCCTACATATGGCAGGATCTCTGAGGGTCCAGATGCTGCGTACCTGGGCCGATGACCGGGCCTATGCCAAAACCCAACTTTATATAAATTGTTATCTAATACATTGTtaatactattaaaataaaagctgttaTTGTTGCAACTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650151.1 True 290 lncRNA 0.48 2 7344924 7371665

Neighbor

gene id symbol gene type direction distance location
LOC103043330 NA coding downstream 389699 6931163 ~ 6955225 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding downstream 489182 6851168 ~ 6855742 (-)
LOC111192905 NA coding downstream 608350 6735157 ~ 6736574 (-)
LOC111192868 NA coding downstream 621394 6722102 ~ 6723530 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 1200716 6139962 ~ 6144208 (-)
tfec tfec coding upstream 90162 7461827 ~ 7533411 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 181600 7553265 ~ 7602288 (-)
LOC103047295 LOC108425379,LOC108280009 coding upstream 399071 7770736 ~ 7801165 (-)
LOC111192943 NA coding upstream 562485 7934150 ~ 7946647 (-)
LOC103022071 ntf3 coding upstream 586365 7958030 ~ 7989801 (-)
G62592 NA non-coding downstream 1425 7343265 ~ 7343499 (-)
G62584 NA non-coding downstream 104625 7237191 ~ 7240299 (-)
G62582 NA non-coding downstream 110485 7234203 ~ 7234439 (-)
G62558 NA non-coding downstream 242618 7102075 ~ 7102306 (-)
G62505 NA non-coding downstream 586448 6757929 ~ 6758476 (-)
G62606 NA non-coding upstream 32134 7403799 ~ 7404547 (-)
G62624 NA non-coding upstream 173593 7545258 ~ 7545751 (-)
G62645 arl1 non-coding upstream 177464 7549129 ~ 7553237 (-)
G62659 NA non-coding upstream 245292 7616957 ~ 7617395 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding upstream 249261 7620926 ~ 7624045 (-)
LOC111192940 NA other downstream 485254 6787342 ~ 6859670 (-)
G62484 NA other downstream 606976 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 611799 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 649535 6633010 ~ 6695389 (-)
G62377 NA other downstream 969944 6374469 ~ 6374980 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 245870 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 794820 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2246996 9618661 ~ 9622788 (-)
G63217 NA other upstream 2943134 10314799 ~ 10411231 (-)
G63516 NA other upstream 4948890 12320555 ~ 12380556 (-)

Expression


Co-expression Network