LOC111192872


Basic Information

Item Value
gene id LOC111192872
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10346960 ~ 10353740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650153.1
AAAGGTTTTGTGACTCAACACCGTAACACAGTGTAACAGCGTGTTCCTGCTGTACGAGGAAGAACCGGGCTGACCGCAGCTGCTGCCGTTCGGCAGTCACCATGATGAAAGCGAACTGACGACACATTGTGCGCTGGTGGAGTTTCGCCAGAGGAAGGCATTGTTTCCTGATGTTCTGACCCGAGTGTAGGGTTTCAGCATGACCTTCTCgTTCAGGAAGTGCCGATCGCTgatttggcatgtctgtgtgtggagAGCCAAACcacaaaataagaataaaagaagaagaagaaaaagtgcaTAGGAAGCAGAAGGGAAAGCAGGGCCAGTGTGTGTTGAATAAGTAGCGGATGGGAGTCTCAGTGTAAAGAGCCTTGCGGATAATCCAGCCAGCTTTGGGGTTCACTGGGAGGCCAGTGCGTGAATCTGGGTCATTCCGGAGTATTAGGAGCAGCGAAACGCTCATGCAGACTCAGCATGAGACCCCATCCCACAATCCAGTACAAATGGTCAGAGGGTGTAGATACACTGCACTGAACTACTACACTCTCCAGCTAATATTTACACAAACAGCTTAACATTTAACATCAATGACTGGACCAAACATTccaattttcatttaaaatcattCCAAACTGCAATAAAATCTGTATACAGTAACATATATCATATGTCAAAACTTcatgtaaactgtaaaaatcCATGTAAAACATTAATTCTACTATAAATTTACTATAGatgtaaataagttaaaatCTTTTGAACAAAATGAACTGCAGAATTTCTGTATACCTTAAATCATCATTAAGTACACCTTAGTCACCTAAGAATGATGAACAGTGacctgtttctttgcattttgcaataaatacatttttgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650153.1 True 882 lncRNA 0.41 2 10346960 10353740

Neighbor

gene id symbol gene type direction distance location
pim3 pim3 coding upstream 30539 10310441 ~ 10316421 (+)
il17rel NA coding upstream 276078 10042203 ~ 10070882 (+)
usp15 usp15 coding upstream 379669 9929508 ~ 9967291 (+)
LOC103038308 kdm5a coding upstream 421065 9900485 ~ 9925895 (+)
LOC103036813 akr1d1,LOC108425343,LOC104966316,LOC107383989 coding upstream 448956 9889217 ~ 9898004 (+)
alg12 alg12 coding downstream 55281 10409021 ~ 10420809 (+)
brd1 brd1 coding downstream 86274 10440014 ~ 10464718 (+)
LOC103028484 srr,LOC108427077,LOC108279919,LOC106575990 coding downstream 1626631 11980371 ~ 11986784 (+)
alg10 LOC108427075 coding downstream 1636860 11990600 ~ 11997857 (+)
c7h12orf40 NA coding downstream 2007444 12361184 ~ 12373369 (+)
G63199 NA non-coding upstream 98929 10247707 ~ 10248031 (+)
G63194 NA non-coding upstream 127065 10219559 ~ 10219895 (+)
G63193 NA non-coding upstream 128020 10218674 ~ 10218940 (+)
G63103 NA non-coding upstream 268964 10077679 ~ 10077996 (+)
G63101 NA non-coding upstream 273561 10073114 ~ 10073399 (+)
G63244 NA non-coding downstream 195607 10549347 ~ 10549622 (+)
G63246 NA non-coding downstream 210956 10564696 ~ 10565793 (+)
G63254 NA non-coding downstream 276388 10630128 ~ 10630473 (+)
G63260 NA non-coding downstream 1276902 11630642 ~ 11635546 (+)
G63268 NA non-coding downstream 1347678 11701418 ~ 11701706 (+)
G63051 NA other upstream 696873 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 906396 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 1806837 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 1931921 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 3491198 6851230 ~ 6855762 (+)
G63432 NA other downstream 2114310 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 2802486 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 3813489 14167229 ~ 14242234 (+)
G64015 NA other downstream 4390995 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 6041586 16395326 ~ 16426623 (+)

Expression


Co-expression Network