LOC111192878


Basic Information

Item Value
gene id LOC111192878
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20957703 ~ 20958378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650155.1
GGAGGTGGGTTAGAAACAAACCTGATTCCTCGAGGGTAGAAGTACGTGAGGAAGCTTACCTATGGAATATGGAAGAGCCTACTCTTAATTCAAAACCATCTAGAACTAGAAGTAagGTGTCTGATTCTGAGAGGGGTGCATGCTGTGCTGTAGTAAGTGTTGGTGAACACAAACCATTGACTTTGGATGACGTCATGCAGGTTGTTACTGAGCAGGGAAAGCAGCTTAGTGAGCTAACGCAGGCAGTAATGGAGTTGACCACTCAGAAAACTCACACGTTCAAACCCGTCTCTAAGGCAAGGGCTCCACTCAGATTTACAGATGATGGCAAACCTATCTGTCTGAAGTGTCAGAAGGAGGGACACATTGCCAGAAATTGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650155.1 True 383 lncRNA 0.46 2 20957703 20958378

Neighbor

gene id symbol gene type direction distance location
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 362402 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 460042 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 559736 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 691506 20262580 ~ 20266197 (+)
lin7a lin7a coding upstream 784399 20155055 ~ 20173304 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 452471 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 757074 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 946881 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 974391 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 1035732 21994110 ~ 22100636 (+)
G65564 NA non-coding upstream 624 20956851 ~ 20957079 (+)
LOC111192987 NA non-coding upstream 122850 20832020 ~ 20834853 (+)
G65494 NA non-coding upstream 207622 20744976 ~ 20750081 (+)
G65482 NA non-coding upstream 388598 20567363 ~ 20569105 (+)
G65476 NA non-coding upstream 403331 20551193 ~ 20554372 (+)
G65576 nav3 non-coding downstream 67424 21025802 ~ 21026070 (+)
G65585 NA non-coding downstream 257557 21215935 ~ 21217263 (+)
G65626 NA non-coding downstream 400992 21359370 ~ 21359667 (+)
G65630 NA non-coding downstream 412672 21371050 ~ 21372121 (+)
G65633 NA non-coding downstream 418868 21377246 ~ 21377776 (+)
G65565 NA other upstream 68 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1163378 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 1616824 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 1678186 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 1679632 19223209 ~ 19278071 (+)
G65575 nav3 other downstream 65797 21024175 ~ 21024574 (+)
agbl5 NA other downstream 482031 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 671409 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 1981177 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 2040992 22999370 ~ 23003468 (+)

Expression


Co-expression Network