LOC111192884


Basic Information

Item Value
gene id LOC111192884
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26264958 ~ 26265971 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650160.1
ataattgtattatctgtactgttttgtcattaattaattgtattttgtttttttgtttttcaggttACTGTAGCTGCTGAGGGAGCTCACCCCCATACCGATCAGGTATGGATCCCCGGTGGAGGAGCAGACCTCTTCCAATAGTGGCGCAGTCTGGAGACTTCTGCTTCAGGACTCGTCCTGGGTCTCGGTGGCAGGGTGAAGATCCAGCCACCTGTGAGGAGCCCCAGATGAAGCAGAGAGCCCACATTAAGAAGTGCACAGAAGGTCAGCTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650160.1 True 278 lncRNA 0.49 4 26264958 26265971

Neighbor

gene id symbol gene type direction distance location
LOC111193008 NA coding downstream 14011 26245760 ~ 26250947 (-)
LOC103037725 crabp1,crabp1a,LOC105895658,LOC107680155,LOC107673308 coding downstream 767437 25475866 ~ 25497521 (-)
snx33 snx33,LOC107680142 coding downstream 887803 25336717 ~ 25377155 (-)
LOC103033632 LOC103033632 coding downstream 1712595 24548268 ~ 24552363 (-)
apex1 apex1,LOC107658891,LOC107656416,LOC107579619,LOC107725930 coding downstream 1738847 24518610 ~ 24526111 (-)
trhde trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding upstream 19330 26285301 ~ 26778380 (-)
cpm NA coding upstream 706673 26972644 ~ 27060138 (-)
LOC103028485 LOC108433191 coding upstream 815367 27081338 ~ 27132749 (-)
celf2 celf2,LOC106927059,LOC103370671 coding upstream 910445 27176416 ~ 27386480 (-)
LOC103046202 LOC108432718 coding upstream 1667431 27933402 ~ 27959414 (-)
G66997 NA non-coding downstream 24886 26239387 ~ 26240072 (-)
G66991 NA non-coding downstream 53772 26210849 ~ 26211186 (-)
G66988 NA non-coding downstream 67289 26197434 ~ 26197669 (-)
G66956 NA non-coding downstream 179575 26082762 ~ 26085383 (-)
G66935 NA non-coding downstream 292556 25971765 ~ 25972402 (-)
G67016 NA non-coding upstream 5337 26271308 ~ 26272915 (-)
G67023 NA non-coding upstream 17455 26283426 ~ 26283640 (-)
G67061 NA non-coding upstream 536353 26802324 ~ 26803940 (-)
G67062 NA non-coding upstream 556805 26822776 ~ 26822992 (-)
G67082 NA non-coding upstream 794859 27060830 ~ 27061123 (-)
LOC103036580 slc25a44,slc25a44a,LOC108432728,LOC108274961,LOC107673271,LOC107727505,LOC107562286,LOC107738649,LOC107680149 other downstream 733978 25516515 ~ 25530980 (-)
G66642 NA other downstream 1603056 24660024 ~ 24661902 (-)
G66619 NA other downstream 1756677 24507834 ~ 24508281 (-)
dusp16 dusp16 other downstream 3104779 23053273 ~ 23160179 (-)
G66081 bcap29 other downstream 3973276 22290685 ~ 22291682 (-)
tmem258 NA other upstream 1766730 28032701 ~ 28035961 (-)
LOC103041081 rbpms2,rbpms2a,LOC107381790,LOC103368877,LOC108275203,LOC107560016,LOC107738652,LOC107680137,LOC107086560 other upstream 1855289 28121260 ~ 28132788 (-)
fuk fuk other upstream 3177385 29443356 ~ 29467227 (-)
atp6v1f atp6v1f,LOC101079638,LOC106511462,LOC104938441 other upstream 4332397 30598368 ~ 30600908 (-)
G67755 NA other upstream 4536739 30802710 ~ 30805567 (-)

Expression


Co-expression Network