LOC111192885


Basic Information

Item Value
gene id LOC111192885
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 27496795 ~ 27497727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650161.1
AGCGCCTCACGGCTCAGAGCCGCTCAACGCGAGTCACAGCCCCCTCCGCTGCTGCTCTCGAGTaggttgaaaagaagatggagaagtTTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650161.1 True 139 ncRNA 0.53 2 27496795 27497727

Neighbor

gene id symbol gene type direction distance location
mdm2 mdm2,LOC107577534,LOC106599688 coding upstream 1378496 26104757 ~ 26118299 (+)
slc35e3 slc35e3,LOC107737854,LOC107710682 coding upstream 1415664 26072585 ~ 26081131 (+)
nup107 nup107,LOC107710680,LOC107590859 coding upstream 1427403 26043247 ~ 26069392 (+)
LOC103027045 magi2 coding upstream 1471378 25704277 ~ 26025417 (+)
LOC103026250 gnai1,LOC107590838,LOC108279833,LOC107386448,LOC100706147,LOC107680033,LOC106609493 coding upstream 1887647 25577886 ~ 25609148 (+)
LOC103045890 LOC108432719 coding downstream 462990 27960717 ~ 27981189 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding downstream 528150 28025877 ~ 28031998 (+)
ptn ptn,LOC106609498 coding downstream 856335 28354062 ~ 28457012 (+)
rtcb rtcb coding downstream 1664951 29162678 ~ 29174983 (+)
commd9 commd9 coding downstream 1940834 29438561 ~ 29441531 (+)
G67149 NA non-coding upstream 32266 27464301 ~ 27464529 (+)
G67141 NA non-coding upstream 45861 27446609 ~ 27450934 (+)
G67110 NA non-coding upstream 166337 27328948 ~ 27330458 (+)
G67103 NA non-coding upstream 283360 27205535 ~ 27213435 (+)
G67090 NA non-coding upstream 303990 27176439 ~ 27192805 (+)
G67163 NA non-coding downstream 181333 27679060 ~ 27679824 (+)
G67164 NA non-coding downstream 187299 27685026 ~ 27685440 (+)
G67168 NA non-coding downstream 222641 27720368 ~ 27720609 (+)
G67169 NA non-coding downstream 297198 27794925 ~ 27796598 (+)
G67170 NA non-coding downstream 319765 27817492 ~ 27817767 (+)
LOC111192916 NA other upstream 1404676 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 2195920 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 2812215 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 2944455 24518622 ~ 24552340 (+)
rpap3 rpap3 other upstream 3113773 24367492 ~ 24383022 (+)
oaz2 oaz2,LOC108432726 other downstream 651533 28149260 ~ 28220857 (+)
G67459 NA other downstream 2059409 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 2088249 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 2789808 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 3100874 30598601 ~ 30600595 (+)

Expression


Co-expression Network