LOC111192923


Basic Information

Item Value
gene id LOC111192923
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1047797 ~ 1049056 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650172.1
GACATCTGAAACAACTACAACTTACACCACAGTACCAGTACAGCTAACAGAGAGGCAGACAATCCCTCCTTCAAAAAATCCCTCATCAAATGTTCCATACATCTATCCAGTGTCTCTTCTGGTTCTGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGTGATCTCTAAGAGGAGTAGGAAGACTCTGCCTGAGGCAGTCTATGAAGAGATTGACCATAAACGtgttcataaaaaatatattaaaaaggAAAGGATGCTCTCTGAAGATCAGCATTCAGGATATGAGGATGTGGATGAGGAGCTTCTTTCAGGTAAGCTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650172.1 True 360 lncRNA 0.43 4 1047797 1049056

Neighbor

gene id symbol gene type direction distance location
LOC111192900 NA coding upstream 39970 1000887 ~ 1007827 (+)
LOC111192898 NA coding upstream 103876 929610 ~ 943921 (+)
LOC111192897 NA coding upstream 120253 919174 ~ 927544 (+)
LOC111192896 NA coding upstream 133492 912891 ~ 914305 (+)
LOC111192895 NA coding upstream 135485 893369 ~ 912312 (+)
cracr2a NA coding downstream 348142 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 581817 1630873 ~ 1693966 (+)
ankrd16 ankrd16 coding downstream 763144 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding downstream 763715 1812771 ~ 1812858 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding downstream 777784 1826840 ~ 1841427 (+)
LOC103039262 NA non-coding upstream 95312 845633 ~ 952485 (+)
G61023 NA non-coding upstream 98713 841595 ~ 949084 (+)
LOC111192927 NA non-coding upstream 130985 914900 ~ 916812 (+)
LOC111192928 NA non-coding upstream 189288 853711 ~ 858509 (+)
G61016 NA non-coding upstream 212524 833987 ~ 835273 (+)
LOC111192863 NA non-coding downstream 1074 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 456287 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 560069 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 709782 1758838 ~ 1761182 (+)
G61132 NA non-coding downstream 740479 1789535 ~ 1790432 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4481 853526 ~ 1043316 (+)
LOC103045537 NA other upstream 422788 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 489217 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 901023 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 396579 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 665761 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 872339 1921395 ~ 1935499 (+)
G61575 NA other downstream 2247490 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4691499 5740555 ~ 5765785 (+)

Expression


Co-expression Network