LOC111192927


Basic Information

Item Value
gene id LOC111192927
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 914900 ~ 916812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650176.1
TCAGGTGAGGTGGAAAAAGAGAACACAACGGAGGACTATGATGATGCCATCCCTGCTTTACAGACACCTGACAGATTATCaaaagaCAATGTGGAGATGTATGATGATGCTATACCTGCTGGAGAGAACCCAAACATTACAACAGTGTGCACTCCAGAGGGCTATGATGATGTCGCTTCTGGGCAGGATGTAGGAGGTGTAGCAGGTGATGGAGACTATGGAGACATTGTGGAGGTGGTAAAGGAGCCTGAGGCAAATGGATAGATCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650176.1 True 270 lncRNA 0.47 4 914900 916812

Neighbor

gene id symbol gene type direction distance location
LOC111192896 NA coding upstream 595 912891 ~ 914305 (+)
LOC111192895 NA coding upstream 2588 893369 ~ 912312 (+)
LOC111192924 NA coding upstream 70210 841037 ~ 844690 (+)
LOC111192892 NA coding upstream 104903 809234 ~ 809997 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding upstream 134103 749881 ~ 780797 (+)
LOC111192897 NA coding downstream 2362 919174 ~ 927544 (+)
LOC111192898 NA coding downstream 12798 929610 ~ 943921 (+)
LOC111192900 NA coding downstream 84075 1000887 ~ 1007827 (+)
cracr2a NA coding downstream 480386 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 714061 1630873 ~ 1693966 (+)
LOC111192928 NA non-coding upstream 56391 853711 ~ 858509 (+)
G61016 NA non-coding upstream 79627 833987 ~ 835273 (+)
G61011 NA non-coding upstream 114030 800649 ~ 800870 (+)
G60996 NA non-coding upstream 174002 740691 ~ 740898 (+)
G60983 NA non-coding upstream 291465 616774 ~ 623435 (+)
LOC111192923 NA non-coding downstream 130985 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 133318 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 588531 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 692313 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 842026 1758838 ~ 1761182 (+)
LOC103045537 NA other upstream 289891 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 356320 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 768126 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 528823 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 798005 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 1004583 1921395 ~ 1935499 (+)
G61575 NA other downstream 2379734 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4823743 5740555 ~ 5765785 (+)

Expression


Co-expression Network