LOC111192939


Basic Information

Item Value
gene id LOC111192939
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6736583 ~ 6738038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650187.1
tcaatcttaagtacgagttaacgaagttcttagcgttacgaagctttcgggaaacccaccccaggtCAATTTGGAGAAGACAATTTCATCGTGGAAGCTGGAAGACCCagatgcacatttttttttagaaaatgcaCTGAAGTGGAAGATgactctgtaaaaaaagaacaagaagcCGATGTTTGCAACACTCAGTCTTTTGAACATGACGCCAGTCTTTTAGGAGAGAAAATGGAAACAGGATTTCCATTTCTTCAATCCTCTGAAGAAACATGTGACTCTGAAAATCCAGAACCTGATCCTACAAAGCAAAATACCTTCCTGTTTATACATCAGAATAAAGAGCAGCAAAGACTTCTGCAGCGTTATGGGGAAATGGTCCTTCTAGATGCTACATACAAGACAAGCAAGTACGCATTACCACTTTTTTTGGTAGTTGTGCGAACAAATGTGGGATATAAACCAGTTGCAGAATTTATATGTGAAAGTGAAACCACTGAAGCCATCTCCGAGGCcctcaaaattttaaaaaattggaATATGGAATGGAAAACCAAAATACTTTATGGTAGATTACTGTGAACAAGAATTGAAGGCACTTCAGTTGGTATTCCCCCAGGCACAGAAATACATTTGTGCTTTCCATCGGGAACAAGCCTGGATACGGTGGACAAGAGAAGGCAAGAACAATCTGTCAGCTCATGAGCGAAGCGAACTACTTGGCTACCTCCGTAGTGTGGCAACTGCCTGTAGTGAGGAAGGCTGCGCTAGGGAGGTTCAGAAGTTGAGAGACAGTTGTCTTTATAagacaaatgattcagtaagaCAGTATGTTGAGAGAAGATGGCTTAGCATACAAGAGAGATGGTGTAGAGCATTTGCTCCACATGGATTCAGCGTATCTGTAACAACAAACAATGGCATTGAAGCCATGAACAACTCACTGAAGAGCTTTTATTTGAAGCTTTCAAATACCGGAACAGTTTCCTCATTGGCTGAAACAGTTGTATGTGATTTTGTTCCAGAACATCTCCTGTCTTATGCAAAACTCAACTATTCCTATACCAGTGATTACAAAGCATACAGCAGTTATGTCCCTGATTTTTTGAGGAACCGTCCCAAAGATTTTGTCAAACACTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650187.1 True 1143 lncRNA 0.41 3 6736583 6738038

Neighbor

gene id symbol gene type direction distance location
LOC111192905 NA coding downstream 9 6735157 ~ 6736574 (-)
LOC111192868 NA coding downstream 13053 6722102 ~ 6723530 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 592375 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 616817 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 1010300 5664901 ~ 5726283 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 113130 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 193125 6931163 ~ 6955225 (-)
tfec tfec coding upstream 723789 7461827 ~ 7533411 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 815227 7553265 ~ 7602288 (-)
LOC103047295 LOC108425379,LOC108280009 coding upstream 1032698 7770736 ~ 7801165 (-)
G62492 NA non-coding downstream 23703 6712063 ~ 6712880 (-)
G62486 NA non-coding downstream 37969 6695658 ~ 6698614 (-)
G62412 NA non-coding downstream 174286 6562072 ~ 6562297 (-)
G62404 NA non-coding downstream 204760 6430582 ~ 6531823 (-)
G62409 pus7l non-coding downstream 292346 6440953 ~ 6444237 (-)
G62505 NA non-coding upstream 19891 6757929 ~ 6758476 (-)
G62558 NA non-coding upstream 364037 7102075 ~ 7102306 (-)
G62582 NA non-coding upstream 496165 7234203 ~ 7234439 (-)
G62584 NA non-coding upstream 499153 7237191 ~ 7240299 (-)
G62592 NA non-coding upstream 605227 7343265 ~ 7343499 (-)
LOC111192938 NA other downstream 3458 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 41194 6633010 ~ 6695389 (-)
G62377 NA other downstream 361603 6374469 ~ 6374980 (-)
G61942 NA other downstream 2114006 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2310427 4335118 ~ 4426156 (-)
LOC111192940 NA other upstream 49304 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 879497 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 1428447 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2880623 9618661 ~ 9622788 (-)
G63217 NA other upstream 3576761 10314799 ~ 10411231 (-)

Expression


Co-expression Network