LOC111192954


Basic Information

Item Value
gene id LOC111192954
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12689319 ~ 12696748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650191.1
gcattagcattagccgctaaccactaattcccccttcagagGTGGAAGGAACCATGGATTCAGTTAGCTACCAGAAGATGTTGGGGTGGACATGCCATGCAGTCAGTGAAAAAGCTGAAGCTTAGGAGACGTTGGTTCTGCCATGGCTTGCTTGCAGAAGAAGGGCTAGAAGGTTCTGGAGTGGCCATCACAATCGCCCAACTTTACTCCTATAAAAAATCTCTGGTATGCCTAAGGCAGTTGCAACACACAAGCCCAATAATGTCAAAGAACTGGAGGCCGTTGTCCATAAGGAATAGGCTAAAATACCTGTTGATCACTAAAAGAAACTTGTGTCAAGCTATGTTTCACATCTGAAGGACGTTATTACTGCCAAAGAGAGCTGTACTAAGTACGAATGTTGAATGTGACTAAGGGGTTGTATAGTTTTGTCAATGAGGAAATCCCAAAAAGAACTTGTTGATATATTAGAAAAAGTATTGATGTAATTTAAGTTggtgtgtggttggtgtggcacagtggataacaccactaccttcTAGTGCGCTACCACATCAAGTGTGTGACCCACcactgtaatagaaataaccttgtaagtcactttggataaaactgtcagctaaatgccatatAAAGTTGCATTTGTCCTTATTTAATCTGATTGTgaataagtttaaaaaataaagttaaacttGCTAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650191.1 True 702 lncRNA 0.40 2 12689319 12696748

Neighbor

gene id symbol gene type direction distance location
pyroxd1 pyroxd1,LOC107584714,LOC107597005 coding upstream 8292 12667180 ~ 12681027 (+)
trnag-gcc_1 NA coding upstream 29801 12659448 ~ 12659518 (+)
iapp iapp coding upstream 30673 12653022 ~ 12658646 (+)
LOC103023853 NA coding upstream 39220 12633279 ~ 12650099 (+)
LOC103033113 LOC108427023 coding upstream 62391 12604110 ~ 12626928 (+)
LOC103025111 LOC108427059 coding downstream 4392 12701140 ~ 12743611 (+)
LOC103034184 LOC108427058,LOC108279609,LOC107689715,LOC107584717,LOC107748475,LOC107597007,LOC100708075,LOC102305399,LOC102790409 coding downstream 71090 12767838 ~ 12803571 (+)
LOC103034836 NA coding downstream 513474 13210222 ~ 13242742 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding downstream 574429 13271177 ~ 13303112 (+)
LOC103036201 NA coding downstream 672932 13369680 ~ 13381915 (+)
G63410 NA non-coding upstream 310392 12377146 ~ 12378927 (+)
G63329 NA non-coding upstream 681800 12007285 ~ 12007519 (+)
G63328 NA non-coding upstream 698923 11986998 ~ 11990396 (+)
G63303 NA non-coding upstream 713766 11956885 ~ 11975553 (+)
G63285 NA non-coding upstream 877729 11811156 ~ 11811590 (+)
G63460 NA non-coding downstream 2300 12699048 ~ 12746828 (+)
G63465 NA non-coding downstream 111119 12807867 ~ 12811899 (+)
G63488 NA non-coding downstream 461577 13158325 ~ 13163098 (+)
G63490 NA non-coding downstream 474054 13170802 ~ 13193768 (+)
LOC111192873 NA non-coding downstream 474948 13171696 ~ 13172427 (+)
G63432 NA other upstream 220417 12468050 ~ 12468902 (+)
G63051 NA other upstream 3039232 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3248755 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4149196 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 4274280 8401840 ~ 8415039 (+)
LOC111192955 NA other downstream 459478 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 1470481 14167229 ~ 14242234 (+)
G64015 NA other downstream 2047987 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 3698578 16395326 ~ 16426623 (+)
G64289 NA other downstream 3742472 16439220 ~ 16442449 (+)

Expression


Co-expression Network