LOC111192959


Basic Information

Item Value
gene id LOC111192959
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15890422 ~ 15907327 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650192.1
GAGAGGATGGAACGCTTATTATCTCCTTGAAGGATGAAGACTCAGTACTCTCCTCCTGGACCCTGCCTTAATACATGAGAAATTTCCTGTTTGGGTGCCAGTTGGAACGCTCCAGCCCGGATGGCAAGTCTTTGGGCTGGTGAAACACGAAGCACACTGGAGCAGCCACATGAAAGAGTCTGCAGGCCGCTGAAAGGACATAAGAGAGCAAATGTGTCCACTTTGATCAGCGGACATCTGTCTCTCCTCTCAACGTGTGATCACTCTTCCGTCTACATTGTCTCTGGCCCTCTTCAGACCCTTCCATCTGGACTTCAGAGGAGCTCTGTGTGAATCAGAGGGCCGGCTCTCGTGTCGGTGCTGTTGTGAAGTCTCTGCGTTTGAGGTTGCTTGCTCGGTTGAGTTCACAAGACGGTGGAGCACTTTTCATTTTGGAACACCTGGTGCTGGTAATCAGCGTAAAACACAAAAAGTACATCATAACTATGTGTTCTTTTGTTCTTGATAGCCAGCTTCTGTTGTTAAACTGAGCTCAGTCCTCATTTAATGATGTGTGCAGCTTTATTTCCCCCACACAAGCCAACGTTTCCAGCTGATGTCACACCACAGATGACGTGCTGGAAGTCCTGCTGGCTAAGCTTGCCCTTAAGAGGacgaagagagaaagagatagcgAGAAAGTGATGATTTTATAGATGAAGAATGCTGTCTATAATGTGGAGAGCATGTGGGGAGATGTCAGTATCAAACACTGTCCACATTACCGAGCCTCGTCAGTCTGGATGCTGttccttttcttttcaaaatgctgtttaaagcagcagccAGATTGTGCGTGTGGTGAGATGGGGTGCTCTTCTCCGTACATCTGTTCTCACTCTTTCCTGGCCAGAGATAAGTTGCATGAAGCAGTAGAAGCAGGAACACCATTACACTCTGGCTGTGCAGATAAACGGCCTGTCCGTCTGAGTCTGAACTGAACCAGTGGACCTTTTGAGGGCTACACTATATTTAGAGGTGGAATCAGTCTGGGAGGTTCTGCCGTCAGATAGCAAAGGGTGCGCTGTCTTTTACCCAGACTGACGTCAGCGGTGGGGGAGAATGCTGAATGTCACATGCACTCTTGATCTCAGAATGCTTTTGTTTCAGTTTGACAGGTGAAGCTATACTTAAAAGTCAATGTCGTTTTTGCTGAGGCTGATCTATGTCAGATGAATAAAAACAGGGCAGAAGGGGATTGGTTCTTTACACAACCACTGCTTTAATGCAatgaaaaatgtacaaaattcttaataattaaaattaattatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650192.1 True 1311 lncRNA 0.46 3 15890422 15907327

Neighbor

gene id symbol gene type direction distance location
LOC103045938 LOC108432519 coding downstream 266074 15578874 ~ 15624348 (-)
snd1 snd1,LOC107738807,LOC107732977 coding downstream 335790 15270863 ~ 15554632 (-)
kin kin coding downstream 1800870 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 1892929 13922539 ~ 13997493 (-)
LOC103038708 NA coding downstream 2134940 13712234 ~ 13755482 (-)
akap14 NA coding upstream 18219 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 440232 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 523973 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 552413 16459740 ~ 16469357 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding upstream 621878 16529205 ~ 16577816 (-)
G64156 NA non-coding downstream 222395 15665176 ~ 15668027 (-)
G64085 NA non-coding downstream 830779 15058374 ~ 15059643 (-)
G64064 NA non-coding downstream 886545 15003669 ~ 15003877 (-)
G64063 NA non-coding downstream 890397 14999809 ~ 15000025 (-)
G64054 NA non-coding downstream 910465 14979722 ~ 14979957 (-)
G64214 NA non-coding upstream 53611 15960938 ~ 15961286 (-)
G64247 nrcam non-coding upstream 193096 16100423 ~ 16105219 (-)
G64273 NA non-coding upstream 233329 16140656 ~ 16141428 (-)
G64280 NA non-coding upstream 259736 16167063 ~ 16167373 (-)
G64313 NA non-coding upstream 269186 16176513 ~ 16180454 (-)
LOC103027187 NA other downstream 22627 15671306 ~ 15867795 (-)
G64060 NA other downstream 895590 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 897692 14990229 ~ 14992730 (-)
G64034 NA other downstream 1104273 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 2002554 13841193 ~ 13887868 (-)
G64387 NA other upstream 677738 16585065 ~ 16585647 (-)
G64492 NA other upstream 975008 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1627969 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1771487 17678814 ~ 17689312 (-)
G64886 NA other upstream 2021180 17928507 ~ 17931170 (-)

Expression


Co-expression Network