LOC111192963


Basic Information

Item Value
gene id LOC111192963
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17039842 ~ 17042071 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650194.1
gtctgaaacagatttaaaacagatacaaatcggATTACTTAAACTCTTCACTTGACGatgtggtctgagacgcatttaaaacagatataaatctgattatttaaaCTGTTCACTTCttgaggtggtctgagacagaTTTGGAATGGACCACTTTAGAAGATGGTCTGAGATGCCTGTAAAATAGATACAAATCAGATCAATTAAACCACTTtagaagatggtctgagacacattttgAAGTGATAAAAAtccgatcactcaaaccacttcaggaggtggtctgaggcgcctttaaaataaatctgatttctCAAACTATTCACTTCTGTAAGTGGTCTGATACAGATTTGGAATggaccacttcaggaggtggtctgagacgcatttaataGAGACATAAATCAGATATCTTAAACTTTTAACTTCACAATGTGGTCttagatgcatttaaaacagatacaaatcggATTACTCAAACTATTcgcttcaggaggtggtctgataCAGATTTGGAAAGGACCACTTCAGatggtggtctgagacacatttaatacagatacaaatctgattactgaaacTGTTCACATGctggaggtggtctgagacagaTTTGGAATTGACCACTCCAGGAGTTGGTCTGAGACAGATTTAATAGAGATATAAATCTGATTACTTAAACTCTTAACTTTACAATGTGGTCttagatgcatttaaaacagatataaatctGATTACTCAAACTATTCACTTCTGGAGATGGTCTGAGAAAGATTTGGAACGGACCACTTCCAAATGGTGGTCTGAGACAGATTTGTAATGGATCAATTCAGGATGTGGTGCGAGACACTTTTAATACAGATATAAATCTGATTACTCAAACTAttcacttcaggaggtggtctgagatagATTTGGAATGGACCActttaggaggtggtctgaggcACCTTTAAaatagatacaaatctgattactcaaaCTATTCACTTCTGTAAGTGGTCTGATACAGATTTGGAATggaccacttcaggaggtggtctgagacagaTTTAATAGAGATATAAATCTGATTACTTAAACTCTTAACTTTACAATGTGGTCttagatgcatttaaaacagatacaaatctgattactcaaaCTATTcgcttcaggaggtggtctgataCAGATTTGGAATGGACCActttaggaggtggtctgaTACAGATTTGGAAAGGACCACTTCAGatggtggtctgagacacatttaatacagatacaaatctgattactgaaacTGTTCACATGctggaggtggtctgagatagATTTGGAATGGACCActttaggaggtggtctgaggcACCTTTAAaatagatacaaatctgattactcaaaCTATTCACTTCTGAGACAGAAGTGGAAGTGGTCTGACAcagattttaaatttaaaacagattgaaatctgattatttaaaCTGTTCGCTTCtagaggtggtctgagacagaTTTGGAATAGACCACTTCAgtaggtggtctgagacgcatttaataCAGATACTAATCTGATTACTTAAACCACTGTTGCGTATTTCATCCAGCTCAATAATTAGATTTCTGAAGACGCATTTATTCACCAGATATAAATGTAAACGTGTAAATGGGGATACAATCCAAATACTGATCACATGAAGTCAgatgaccaggtgtaaacgggGTCTTATTGGAACTCAGTAGAAAGATTGTGTTTCCTGTGTTTCTGTATGAATATAAATGAATCTGAATGAGCAGAAGTGGTCTGAGTCCAGTATCTGAAGTTGTGTCCTCAGTGAGACGAGGACGCGTGTCCTCCTGGAGCTGGGAGCTGGTGGACCGGGCGTAGTTATGCATTGGCGTcagcagagtttagtgttttagaCTGCAGTACCTGTGCCTACATGGATACCATGCCGTGTGCTGCCCTGCTTCAGGGTGTAATATTCCCTTGCTTTTCTAAAGGGGTTTAAtgtttcaaagatttttttaatgctttggaTATCTTGTAATCATGATATTCTGGGTTTTTTtccaaggcttttttttttcagttccacttaaatgtaaattatgcaTTATATAGAGCATCATTTTAAAGATGACTTGGTactttaattattgtaattatgaAGAGATGTAgcctttattaaaatgtttatatttttcaaatGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650194.1 True 2192 lncRNA 0.37 2 17039842 17042071

Neighbor

gene id symbol gene type direction distance location
LOC103039070 NA coding downstream 94177 16895580 ~ 16945665 (-)
LOC111192875 LOC108437882 coding downstream 332767 16696081 ~ 16707075 (-)
LOC103027149 LOC103027149 coding downstream 379335 16654113 ~ 16660507 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 462026 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 570485 16459740 ~ 16469357 (-)
LOC103042974 LOC108437161 coding upstream 3443 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 61224 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 679058 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 740681 17782752 ~ 17797809 (-)
LOC111192966 NA coding upstream 765003 17807074 ~ 17817082 (-)
G64510 NA non-coding downstream 86972 16952588 ~ 16952870 (-)
G64508 NA non-coding downstream 91054 16948589 ~ 16948788 (-)
G64505 NA non-coding downstream 133821 16905403 ~ 16906021 (-)
G64491 NA non-coding downstream 147377 16877616 ~ 16892465 (-)
G64485 NA non-coding downstream 149059 16804561 ~ 16890783 (-)
G64619 NA non-coding upstream 103207 17145278 ~ 17145667 (-)
G64622 NA non-coding upstream 113535 17155606 ~ 17156047 (-)
G64632 NA non-coding upstream 130578 17172649 ~ 17173562 (-)
G64682 NA non-coding upstream 536726 17578797 ~ 17581592 (-)
G64688 NA non-coding upstream 564823 17606894 ~ 17670417 (-)
G64492 NA other downstream 151939 16882335 ~ 16887903 (-)
G64387 NA other downstream 454195 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 1172047 15671306 ~ 15867795 (-)
G64060 NA other downstream 2045010 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 2047112 14990229 ~ 14992730 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 493225 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 636743 17678814 ~ 17689312 (-)
G64886 NA other upstream 886436 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1582804 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 1596236 18638307 ~ 18650343 (-)

Expression


Co-expression Network