LOC111192982


Basic Information

Item Value
gene id LOC111192982
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19250226 ~ 19252449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650195.1
GGAGAGGTAGAGAATAATGGAGAAGTATAGATAATGGAGAGGTAGAAATAATGGAGAAGTATAGATAATGGAGAGATATAGATAATGGAGAAACAGGATTTAAATCAGATTatcctttaaaatatataatttatatatgacTAATATAATCTGCTGAAACCTCAACAGTTTACAGTTTTGGGCTcaataatgcagaaaaataaTTGAAGGGTTTTGGATTCTCCATTACTGTCACAATATTGTTACCATTCCTCTGCTGGCAGGATAACCAGCAAGCTGGTTGGGTATTTTTGTTAAGGGGCGGGGCTTTATTTATAGCACATTCTTCAGGATTACACACATTCAGTACAGAGCGGATTATATAGAAACTGATTCTGGCCGGAATGTGAATTATCATAAGTTGGAAAAGGGCCTGATGATCATTATGTGTCTAGACAGATGGAACAGCCAGAACCCACCATCATTAGCCCACCCCCACTGCACTATCctctatcagccctcactacaactcccataattcacctcaccttaccatgagcacactgaccagtgttcaaccaacttcactcacaagataacacctcacaacgttTACAGTTACTGGTGTTCCCAACCATCCCCTGAAGTAACCTTTAGTAATTTTGTAACTTCTGGGTAATCtgtgtaattatgtaattagaAGCTGATCTGTGCTGCAGGATCTTCATTtgaatacaatataaatattatttgaaatgaataataatttttaaggaTGATAATTTAATCCCGTGCTGCAGAGCAGGGTAAAGAGCAGGGTGTTACTATAAgcatgtttttgttattatagTTGAGGCACCAGGTGTCCATTTCCTGTCCTATTGTGGGGGGGTGGCAGTGACTTCCTGTTTTTACGATTGGCACCAGAGCAGAAATCTCCTCCATTGTTTCTCTGAGAAAACTAACCTCCAGCTGCTGGTTCTCCGCTGATTAACGGCCGAGTTCTGCTAATGGTTCTGGAATGCAGGAGAAACAATCCTGCAGTCGAGCTGCAGGACAATAACAATATCCTGAACTGCAGGAAAACAGATCAGCACCATTAACACTCATTAGCCCAGCGCTAACATTCATTAGCCCAGCACTTACGGTCATTAGCCCAGAGCTAACGCTCATTAGCCCAGCGCTAACATTCATTAGCCCAGCGCTAACGCTCAtagcctctctctctgtttctgcagAAGATCCAGACCATCAAACCACAGACTCTGTGGAGTACGTCCAGCTCAACCACTGCAATCAGAACCCCGAGTAAACCCGGCCGCACCCTGGCTCCGCCCCCTTTAATTACACCGCTAATTTATTCTGCTTCTCCActggggaggggggaggggggcgcACGGCTGGACACGAGCCGGCGGACCTGTGggatatttgtgtgtatatgagttaaACAGTCGTGGTGTTGAGTTATGTGTTGAGTTATGGATGCTGTTATTGACATTGTGTTGAATTATAGATGTTGTGTTGGGTTATGGACAATGTGTGTAAAGCTGAGAATAAAGGTTCTGCTTTCAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650195.1 True 1557 lncRNA 0.43 2 19250226 19252449

Neighbor

gene id symbol gene type direction distance location
LOC111192912 NA coding upstream 71639 19177002 ~ 19178587 (+)
LOC111192965 LOC108435873 coding upstream 230958 18990517 ~ 19019268 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding upstream 543680 18687257 ~ 18706546 (+)
LOC107197347 NA coding upstream 567110 18669432 ~ 18683116 (+)
LOC111192972 NA coding upstream 580792 18657276 ~ 18669434 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding downstream 15973 19268422 ~ 19271847 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 34386 19286835 ~ 19305457 (+)
cd36 NA coding downstream 116065 19368514 ~ 19399220 (+)
LOC103040257 kdm7a coding downstream 317537 19569986 ~ 19598049 (+)
kmt2e kmt2e coding downstream 363161 19615610 ~ 19660520 (+)
G65144 NA non-coding upstream 87308 19162569 ~ 19162918 (+)
G65122 NA non-coding upstream 217475 18945326 ~ 19032751 (+)
G65116 NA non-coding upstream 341540 18901452 ~ 18908686 (+)
G65044 NA non-coding upstream 409662 18792182 ~ 18840564 (+)
G65150 NA non-coding downstream 1034 19253483 ~ 19257583 (+)
G65178 NA non-coding downstream 341462 19593911 ~ 19594223 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding downstream 348439 19600888 ~ 19601638 (+)
G65182 NA non-coding downstream 357016 19609465 ~ 19610521 (+)
G65183 NA non-coding downstream 358463 19610912 ~ 19611872 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 626727 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1530314 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 2362031 16833290 ~ 16888195 (+)
G64449 NA other upstream 2374285 16873087 ~ 16875941 (+)
G64431 NA other upstream 2496666 16753043 ~ 16753560 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 24353 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 27843 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 528214 19780663 ~ 19794325 (+)
G65565 NA other downstream 1704686 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1771726 21024175 ~ 21024574 (+)

Expression


Co-expression Network