LOC111192990


Basic Information

Item Value
gene id LOC111192990
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21378984 ~ 21383407 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650199.1
GATGGAAACCCAGCAGTGCTGAACTTCACCTGGTACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCACCATCACAGAGACTAACGATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGACCTTCAGTATCCTCCGAGAAACACATCTGTATCAGTGGTACCTCCTGGTCCAGTTCTGTTGGGGAGTTCTGTGTCTCTGGTCTGCAGCAGTGATGGAAACCCAGCAGTGCTGAACTTCACCTGGTACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCAACATCACAGAGACTAACAATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGATGTTCACTATCCTCCGAGGAACACGTCTGTATCAGTGGTACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650199.1 True 468 lncRNA 0.50 3 21378984 21383407

Neighbor

gene id symbol gene type direction distance location
nav3 nav3 coding downstream 22476 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 568273 20522855 ~ 20810711 (-)
myf6 myf6 coding downstream 1173329 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 1189283 20183094 ~ 20189701 (-)
acss3 acss3,LOC107755903,LOC107749070 coding downstream 1314194 20053951 ~ 20064790 (-)
mrps10 NA coding upstream 425878 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 440489 21823896 ~ 21877702 (-)
LOC103040999 LOC103040999 coding upstream 582570 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 605848 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 865480 22248887 ~ 22273098 (-)
G65677 NA non-coding downstream 6862 21371062 ~ 21372122 (-)
G65625 NA non-coding downstream 21266 21357213 ~ 21357718 (-)
G65624 NA non-coding downstream 29871 21348739 ~ 21349113 (-)
G65615 NA non-coding downstream 153387 21224645 ~ 21225597 (-)
G65602 NA non-coding downstream 227125 21148719 ~ 21151859 (-)
G65684 NA non-coding upstream 26844 21410251 ~ 21410643 (-)
G65687 NA non-coding upstream 48405 21431812 ~ 21435689 (-)
G65686 NA non-coding upstream 52427 21435834 ~ 21439416 (-)
G65713 NA non-coding upstream 151995 21535402 ~ 21558591 (-)
G65717 NA non-coding upstream 157591 21540998 ~ 21544459 (-)
llph llph other downstream 1579382 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 1773259 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2008276 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 2094952 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 2355326 18898185 ~ 19023658 (-)
ost4 NA other upstream 162011 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 246551 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 907278 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1669866 23053273 ~ 23160179 (-)
G66619 NA other upstream 3124427 24507834 ~ 24508281 (-)

Expression


Co-expression Network