LOC111193011


Basic Information

Item Value
gene id LOC111193011
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29211775 ~ 29354073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650205.1
CGCTCtcatttcaaattcaaattttaaCGGAAACATTGAAAGATAAACGCGCTCGCTCGCGGTTTCCAGTCCGCCGCTGCCGAGAATTACAGCCTAATTAAGGGCCTTCTTCATCCCCACAGTTATTATACTGAAAATTCTCAAAACTTATGTTAATTTATCGTTATACCGCAGCGTTAACATCTGACAAGTCCTTCAGAAATTGGTCCTTCGACACAATATGTGGAGTTTCCCTACCAATGTTCACAGAGATGAGATCACAGACTTCGAGTACAATATGATAAGCAGATCAACACGGATCCTCCATGGTGTCAGTTTTTGCATGCAGGGAGTGAAAGGACTTAAAGGTTTGGGAAAGGAAGAGTTGAAAGACAGCTGTCCTCTTTTACACAGACAACAGGACTTCAATAAGATGAAGGAGCGAAGAGAAGGAGCCATGGCAGACCTTTAGATCCTGAGCCAGATGTTAACAAGCCGCAGACTCGGAGATGAAGAGCACACCTGGTGTTGTGCCCAGACTTTTGGTTGATTGTGCCTACCCGGTCCAGTGCAGAGTCCTTGGGATCTCATCCTGTGTTTGGAttattttctacactgtttACTGCAGAATGATAAAAGCGTTTCCACACACAATTGTGTTTTCTTCCTCGTGTCTTTTGTGCACATCTGATGATTGGCACTCTGGTTTCAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650205.1 True 693 lncRNA 0.44 4 29211775 29354073

Neighbor

gene id symbol gene type direction distance location
rtcb rtcb coding upstream 36792 29162678 ~ 29174983 (+)
ptn ptn,LOC106609498 coding upstream 754763 28354062 ~ 28457012 (+)
tmem138 tmem138,LOC105904230,LOC107561148,LOC107551428,LOC107655161 coding upstream 1179777 28025877 ~ 28031998 (+)
LOC103045890 LOC108432719 coding upstream 1230586 27960717 ~ 27981189 (+)
LOC111192885 NA coding upstream 1714048 27496795 ~ 27497727 (+)
commd9 commd9 coding downstream 84488 29438561 ~ 29441531 (+)
LOC103033872 NA coding downstream 146654 29500727 ~ 29503311 (+)
LOC103030285 NA coding downstream 473406 29827479 ~ 29832721 (+)
LOC103044724 NA coding downstream 844976 30199049 ~ 30236846 (+)
calu calua,LOC108432523,LOC107587143,LOC107725564,LOC107578970 coding downstream 940522 30294595 ~ 30304041 (+)
G67331 NA non-coding upstream 62100 29146393 ~ 29149675 (+)
G67318 NA non-coding upstream 482604 28726583 ~ 28729171 (+)
G67320 NA non-coding upstream 483068 28728220 ~ 28728707 (+)
G67279 NA non-coding upstream 887669 28323721 ~ 28324106 (+)
G67278 NA non-coding upstream 899225 28312287 ~ 28312550 (+)
G67376 NA non-coding downstream 82245 29436318 ~ 29437357 (+)
G67418 NA non-coding downstream 89447 29443520 ~ 29445258 (+)
G67428 NA non-coding downstream 115778 29469851 ~ 29473184 (+)
G67416 NA non-coding downstream 137692 29491765 ~ 29492988 (+)
G67460 NA non-coding downstream 205748 29559821 ~ 29561371 (+)
oaz2 oaz2,LOC108432726 other upstream 990918 28149260 ~ 28220857 (+)
LOC111192916 NA other upstream 3119656 26080452 ~ 26092119 (+)
cspg4 cspg4 other upstream 3910900 25189185 ~ 25300875 (+)
lingo1 lingo1,LOC107673268,LOC107727415,LOC107562294,LOC107680146,LOC107560004 other upstream 4527195 24599166 ~ 24684580 (+)
osgep apex1,osgep,LOC107658891,LOC107656416,LOC107579619,LOC102796710,LOC103033632 other upstream 4659435 24518622 ~ 24552340 (+)
G67459 NA other downstream 203063 29557136 ~ 29558666 (+)
G67453 cat,LOC102775586,LOC102293936 other downstream 231903 29585976 ~ 29592287 (+)
LOC111193014 NA other downstream 933462 30287535 ~ 30289624 (+)
G67690 atp6v1f,LOC101079638,LOC106511462,LOC104938441 other downstream 1244528 30598601 ~ 30600595 (+)
G67692 arf5,zgc:77650,LOC105916194,LOC101172462,LOC107387912,LOC105020167,LOC105888566 other downstream 1254302 30608375 ~ 30611978 (+)

Expression


Co-expression Network