LOC103028258


Basic Information

Item Value
gene id LOC103028258
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4011384 ~ 4044308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_452999.3
AGCTTAAAAGACGACATTTTCGTGGACGGTACCGAAACCAGTCGCAGCGGCGGGGAAACGACGGTTAGCTAGCCGCCGACTAGCCGCCTCTCCTCGGTCTCGCTTCGGCGTTGCCctggcgctgctgctgctgctgctttacaAAAGTAACCGGGGGACGGGAATTCAATTCACCGTGAAGAATGACATCTTTTCCACCGCCTGTGGACTGGGGGACGtacttgaacttgaactagaACACTGTGAGCTAACTTAAAGCCGTTAACACCGAGGCTAGCCACTTTTTCTTACGTTTGTAGCTGATTTTGTATCTCACACACGGACTCGGGCACGGCTGTAGCTGCTAAATAAACCACCATAAACAACGAAGCGCAACACACCACCAATGGTGCTTAAAATGGCGAAAACTTGTTCACACAGTCCCTGATTCACCTGGGTTCTTTCAAACAGCTTTTCAATCAGACTTCCCACAGAATTTTGAAGATGAAAGGAGAGTCTTATTCTTGACAGGATGATACAGAGGCTGACCCCAGAGTTCACAGCTGTAATTGAGAAGTCTCACAGGCACGTGCACACGGGGGCCCAGGAGAGACCACCGCCGCCGCAGTGAGGCCGCTACCTCTCCAGAAAGAGGCAGTGAAAGATGGCCTGCAGAGAAGCAATGGTTGTTTTGTACACAAAAGCATGGCCTTGATGAAGAGGAGCTCTGATGCGAGGTGGTATTTTTATAGCATTAACGAGGACACCTCAGAAAACTGAGATTTTGTTCACATTATTTCATTGTATTCTCAAGAAAATAACAATGAAGTGtgagaaaagtgcttttttccaATGTGAAATTTGTCACATATGAGACTCATTATTTGATGTGTATTAAGCTATGTACAAATCTCATAACAATTACTCAATTTAAGTATGATGCTTTTGAAGTCAGTTTTATTTATCAGTATATCACAATGCATAAATGCCGTTTTTAATGCGCTTTATTAAGTGCGTATATTgtagctgtccaatgaaaaacaagtagcTCTTCTTGACTATTTTTacaacataatttgaacacacactgttgtttacactgtgtaaaaatatttctaaatgaaTGGACCAAGAGAAATTCTCCAGAATGACCTGAAattatttctttgttacatTAAAAGCTAAGAAGGTTCGATCTTCCTTTTGTAAAATTTCTATTTTGGAgatatgtttttcattggacagtgagaATATGTGCATCCCGGTTTTGCAGGACATGTAGCGGTGTAAACATCTCATTATATATGCCACACATACACtaaataattctttaaattaaCATCTTTGAGTGAAAACGTCacagtgtataaatgtgtatttacaCTATTTATGCAGTGTACTGTACATGTGGTACTGTACAATTAGAATATAACATCTTGTCGTTTGTGCATTGCCACACTTCGTTATGTAGTATACTGAACATGTAGCTCTGTTAAAATGCTTGTCTGTTTTCTGACATATGAAGTTGAAGAACGGAAGCTTTTATCCAGCaggagagagacacagtcctTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTTGAGCCCTTGCTGTGAGATAACTATACAACTTACTGTCTTTCCTGAAGTGGCCGTAATCCCATCAATCAAGACAACCCGCACCAGTGAAGAGCCTCAACACAAAAGCGTAAAGAATTTAGTGAATGTCATGCTGGTAGCTGCAGGTACACTTCAAAAAACGGCTCCAAAAAGGATTCTTTGGAGCGATGCCATCAGATAATCGTTTTTGGTGTGTGAAGAACATTTCAAAGGGTATTCTTTTGAACAGTATTTTTTGAAAATGACATGTAAAAGCatgaaaaaacttaaaataacataGCTTGAGGGTTTTATACCAATTACATTTTCACTATTACTAGATATTTATGgcaaacaaaacattttggaaaccataatgtgtgtgtatgaatacaTTAGGATTTCTTCTTATATGGAACATAATAGAGTAATggcaaacaaactaaacaagCTGAATATTCTGCATCATGTTGAATGAGTGGTCTAGTCTCTGGTGAGCACTGTGAAACTGTGAAACTGAGAATGCCAAACAGATCTTCTTTGGGTTCTGCTGATGTTTACCCATTTCTGAGCCCAAATGAGATTCACTGCACAGCAGGGAAGCCTCTCTCTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTCGTGATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCAATACAGCACTGGATACCAACATCAATAAGGCACCAAGCCAGCCCAGTCACTGAGTAAGtaatcattcatttaatgagttttaatgtgtttttgacGTTATGTTTTTTGGCTTGGATTTTTATGTCACATTTTGTAGTGTGAGCTGCAGAACCATAATAAAGATATGAACA

Function

GO:

id name namespace
GO:0065007 biological regulation biological_process
GO:0051716 cellular response to stimulus biological_process
GO:0023052 signaling biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007154 cell communication biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_452999.3 True 2468 lncRNA 0.40 5 4011384 4044308

Neighbor

gene id symbol gene type direction distance location
atxn10 atxn10 coding upstream 42428 3956662 ~ 3968956 (+)
LOC103029111 NA coding upstream 61650 3937491 ~ 3949734 (+)
LOC103031106 LOC108438797 coding upstream 157657 3847043 ~ 3853727 (+)
cfap54 NA coding upstream 316460 3656162 ~ 3694924 (+)
mcat mcat,LOC107553884,LOC107732994 coding upstream 359733 3645317 ~ 3651651 (+)
LOC103027723 ppara coding downstream 3934 4048242 ~ 4074563 (+)
mcm10 NA coding downstream 39375 4083683 ~ 4099389 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding downstream 631051 4675359 ~ 4701435 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 1206825 5251133 ~ 5261551 (+)
LOC107197570 LOC108442310 coding downstream 1377460 5421768 ~ 5423304 (+)
LOC111192865 NA non-coding upstream 297136 3713557 ~ 3714248 (+)
LOC111192864 NA non-coding upstream 297961 3712242 ~ 3713423 (+)
G61657 rint1 non-coding upstream 313603 3695234 ~ 3697781 (+)
G61607 NA non-coding upstream 613612 3394516 ~ 3397772 (+)
G61608 NA non-coding upstream 615349 3394779 ~ 3396035 (+)
G61804 NA non-coding downstream 12131 4056439 ~ 4056959 (+)
G61815 NA non-coding downstream 78374 4122682 ~ 4122963 (+)
G61790 NA non-coding downstream 86009 4130317 ~ 4131090 (+)
G61786 NA non-coding downstream 87455 4131763 ~ 4136771 (+)
G61852 NA non-coding downstream 98753 4143061 ~ 4143691 (+)
G61575 NA other upstream 707386 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 2075885 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 2202454 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2529966 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2968068 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 1696247 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 1737783 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 1937928 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2806922 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4357532 8401840 ~ 8415039 (+)

Expression


Co-expression Network