CI01000010_04803003_04849985 (FAF1)


Basic Information

Item Value
gene id CI01000010_04803003_04849985
gene name FAF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4803003 ~ 4849985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04803003_04849985.mRNA
AATTTCTCCAGTGAAGCATCTCAGACTGATCCCTATGGACCTCACAACCAATCAGAAGCCACAGCACCTACGCCCTCAGCCCCGCCTTCTTCAGCATCAGCAGCATCATCATCTTCCTCACCCCCGTCTTCATCCAGCCCGGCCTTCTGCCCTGTCCAGCCCTCACGGCACATTGTGGAACGGCAGTCACGGATGCTCAACTTCCGTGTGGAGTACAGGCAGCGCTCCATAGAGGTGGTCCTGGAGGAAGCCAGCACAGTCGGTGATATTAAAACTATTTTAGAGACTGAGCTACAGGTCCCTGTCTCTAAAATGCAGTTAAAAGGCTGGAAGAGTGGAGATGTATCTGACAGTACGGTTCTGCGGAGTTTACACCTGCCCAAGAACAACAGCTTGTATGTGCTCACCCCTGATATTGCCCCTTCAGCCAGCACCAGCCAGAGCAGTGCCCAGCAAGGGTTGTCAAATCAGAACTACCTGCTCGTCATTAGCCACCGTGAAGCACAGAGAGATTACAGCCTCAACTTCCCCGCGAGCAAAACCATCCAGGAGGTGAAAAGGAACATTTCAGACCTGACAAATATCCCTGTGCGGCATCAACAGTGGGACGGCTGGCCTGCCTCTGCCTCAGACGACTCGATGACTCTGGCCGCCAGTGGGATCAGTTACCCCTGTCACCACCTGACTGTGTGCAGAAGATCTTCTCCTGCGCTCACGGTGGACCAGACAGACGAGTGCACAGATGTCCACATGGTCAGTGACAGTGAGGGGGATGATTTCGAGGATGCACCTGAATTTGGTGTAGATGAATCCGAGATCTTTGGCATGGGAAGCTCAAGTTGTCGAAAGTCTCCGATGATGCCAGAGAACAGTGAAAATGAGGGTGATGCCTTACTGCACTTTACTGCTGAATTTTCTAGAAGATATGGCGATTGCCATCCTGTGTTCTACATCGGCTCCTTGGAAGCAGCATCTCAAGAGGCCTTTTACGGCAAAGCCAGAGATAGAAAACTGCTGGCCATCTACCTCCACAATGACGAGAGTGTCCTCAGTAACGTGTTCTGCTCCCAGATGATGTGTGCGGACTCCATAGTGTCATATCTCAGCCAGAACTTCATCACATGGGCCTGGGACGTTACTAAGGAAGCTAATAAAGCCAGACTACTCACGATGTGTACAAGGCACTTTGGCAGTGTTGTTGCACAGACCATTCGGACGTACAAGACTGACCAGTTCCCATTACTTCTAATTGTAATGGGCAAACGGACATCAAATGAAGTTTTAAATGTCATTCAAGGCAACACAACAGTGGATGAACTTATGATGAGACTCATGGGAGCCATGGAGATCTTCACTGCACAGCAACAAGAAGACATCAAAGATGAGGATGAACGTGAAGCCAGAGAAATGGTCAAGAGAGAACAGGATGAAGCTTATCGTTTGTCTCTGGAGGCTGATCGTAAAAAGAGAGAAGCGCAAGAGCGAGAAGAGGCGGAGCAAGTTCGTCAGGAGCAAATCAGAAAAGAGCAGGAGGAGGAAAGAGAGGCTATCCGTCTCTCATTGGAGCAAGCCCTGCCACCAGAGCCCAAAGAGGAGGGCGGAGAGCCAATCAGCAAGCTGCGCATCCGGACGCCAAGCGGCGAGTTTTTGGAAAGGCGGTTCCTGGGCAGCTGTAAACTCCAGGTCCTGTTCGACTTCGTCGCCTCAAAGGGCTACCCATCCGACGAGTTCAAATTGCTCACCACTTTTCCTCGCAGAAATGTGAGT

Function

symbol description
faf1 Acts upstream of or within cartilage development; fin regeneration; and pharyngeal system development. Is expressed in pharyngeal arch; pharyngeal arch 1; pharyngeal arch 2; and pharyngeal arch 3-7. Orthologous to human FAF1 (Fas associated factor 1).

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
K20703 FAF1; FAS-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04803003_04849985.mRNA True 1767 mRNA 0.51 15 4803003 4849985

Neighbor

gene id symbol gene type direction distance location
CI01000010_04753467_04770912 RNF11L2, RNF11B, RNF11 coding upstream 31329 4753231 ~ 4771674 (+)
CI01000010_04735645_04749008 TTC39A coding upstream 53779 4735645 ~ 4749224 (+)
CI01000010_04696294_04717129 EPS15 coding upstream 85781 4696294 ~ 4717222 (+)
CI01000010_04686730_04692395 CALR coding upstream 110370 4686660 ~ 4692633 (+)
CI01000010_04640858_04683752 OSBPL9 coding upstream 119225 4640516 ~ 4683778 (+)
CI01000010_04871254_04873119 DMRTA2, DMRT5 coding downstream 20555 4870540 ~ 4873918 (+)
CI01000010_04934550_04955403 NA coding downstream 83871 4933856 ~ 4956630 (+)
CI01000010_05012978_05018219 NA coding downstream 161394 5011379 ~ 5018346 (+)
CI01000010_05047527_05065421 NA coding downstream 197542 5047527 ~ 5066870 (+)
CI01000010_05185530_05200227 NA coding downstream 335136 5185121 ~ 5200514 (+)
G63096 NA non-coding upstream 29304 4772221 ~ 4773699 (+)
G63058 NA non-coding upstream 211864 4590169 ~ 4591139 (+)
G63078 NA non-coding upstream 230509 4572277 ~ 4572494 (+)
G63070 NA non-coding upstream 245704 4556992 ~ 4557299 (+)
G63069 NA non-coding upstream 248022 4554752 ~ 4554981 (+)
G63131 NA non-coding downstream 29039 4879024 ~ 4879521 (+)
G63134 NA non-coding downstream 51448 4901433 ~ 4901642 (+)
G63149 NA non-coding downstream 96480 4946465 ~ 4946668 (+)
G63151 NA non-coding downstream 103557 4953542 ~ 4953763 (+)
G62983 NA other upstream 353676 4448172 ~ 4449327 (+)
G62856 NA other upstream 863058 3937757 ~ 3939945 (+)
G62838 NA other upstream 909210 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 1471817 3313695 ~ 3347796 (+)
G63403 NA other downstream 845460 5695445 ~ 5707085 (+)
G63405 NA other downstream 857986 5707971 ~ 5717250 (+)
CI01000010_05789479_05790006 NA other downstream 906968 5788332 ~ 5790204 (+)
G63524 NA other downstream 1524573 6374558 ~ 6374667 (+)
G63572 NA other downstream 1735943 6585928 ~ 6617806 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036314 faf1 coding NC_007119.7 CM002892.2 16274778 ~ 16406440 (-)