CI01000010_04934550_04955403


Basic Information

Item Value
gene id CI01000010_04934550_04955403
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4933856 ~ 4956630 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04934550_04955403.mRNA
GCATAAAAACAACTTAATACTTCATGCAGAGAATGAGTTATCTGTGATTTAAATGTAATAATCTGATGCGCATGTGAGACAGCTTAATTAAATCAGATATGATTTGAATATCGTCTAAAGGATGTCTTTTGTAATGAAGGCATAGGAAAAATTGTCAAACGACAGTAATTGCTGTAAATTGAGGACTTTGTACAAGAATATATTATGGAAATTGCGAAAGTGGTCAAAGACCAATGAAAATCATTTAAAACATAATCTTCAATTTTTAGTCTTTTCCATCTCTGCAGCTTGGTCATATTCTGCCTAATATCACAAGTTTTTGAATTATGAAAATATAATGATCACAGACAAACGTACTAGTAGGATTTGAAATGATCTCAAGCGTGTTTTTAAATGATTTAATCCTTTGACTAAACTGATGCATATATAAACGCTATTATTTCTACTAAATGCCATTAATAAAATACATATTTATTATTTATGTTGTAATTGTTATTCATGTGTTAAGTTTTGATTTCATTTACGTTACATTAATTCACTTAGCAGATGCTAAATGAATAAATGTAATGTAAATGAAATCAAATTTCACCAAACACATTTTCAAGGCTCAGCAAACAGTGCTTCATAACTATTCATAACTACTCCAAACATCTAGTCATCTGCAGCACCGAAACCTCATGAAGTGAGACGTCCAATGGATCCTGTCAGTACCGATCTGGGCTTGGAGATCCGCTTTGTCCTCAGAAGGCAGCATCAGCGGCTGTGTGTTGACTGGAAGGAGACCCCCTACCCAGCAGCAGCAGCCAGGGAAGCCCACCACATCATTACAGCACAACAAATCCAGACTCATATCAGCTGTGCTGCACAGCTTGAAGCAACAAACTGTAAACTCAAATCATCCGGGTCTGAGAATCCCTGGTCCAGAAAGCCTCTGTTTAGCAATGGAGCGTCGACACGTGGCCTAGTATGGTTTCCGATCACGTGGTATGAGCCTAGCAGGGAGGCAAACGGCCACACGCCGTCTGACAGAAAGACAGAGAGAGCAAAGCCAGCGGGCCATATGTGTCTGGTTGTGAGAGGAACTCAAACCGCAGACTGTCCAACACAGAAATGCTGCAGCTGCCCAGCTCTTCCTCATGGCAGAATTAATGGAGTGCTCAACATTGAGAGGGTGAATGGCGTGACTCCACATCTTTTGAGCAAATGTATGTCAGATTGTGAGAGATTGAGTTTGCATTGCATAACATGCAAATTTGTCACATATGGCATTAAGCCAGATGTTTACAGAAGATGGCGATCAAACGGCGGATGTGTGCATTACTCATCTGTCATGTCTTTCCATAGAAGATACCTCACAAGAGAATTGGAACGACCGGATGGCTTTATCACACCCCTCATCCCTTTCGCCCTTCAGCTCAGCATCGAGCCCTGCCCACCCCAAGGACATAGACCACCATTAAGCCCAGCCCACCACAACGCCACAGGCCACAAACTGAGGCCAACCATCCATGTGGCTGCCACTATAAGGCGCTACAGGGGGAGAGACACTGCGATATGGGCACGCACTATAGAGGCACGGCCCAGCGTTTCCAACACCCCCGCAAACTCTCGCGCGTCCTAGACGCTCTCCCGTGCAGTCATCCACGCTCAGACACGCGGAGGGTGATGCCATTAACCAAAAGAGGAGGACGTAATGCAGGAAATTTGTTCGTACATCAGAACAACATTCTACTGGGGTCGTTGCATAATTCAAACTCCCAGCCGCAGCGGGGTTTGAGAAGGGCCGTGCCGCCGCCGCCGCCCCCTTAGGGACGGAGCAGAGGAGGATGGATGGCATTAGAGGTGGAGGAATGTAAGACTGCTCATGAACGTGACTTTGTTTTTTCGTTCTCCAGCATTCACACCGGTCTTAACAAGAGCCGAGCTCTCCATTCAGGAAGTTTACCTCTCAAAATAGACTATATCTTAGAAAATATATAACAGGTGTCATCTATCAAATATTATCTGCTATAGCTATTTTTGTTCAACCAGTACAATCAGAGTCAATGCTTTTTTTTTTGTTGTTTTTTTTTTTGTTTTTGTTTTTTTGGAGTATCAATGTGGTTTAAATGAAGGTTACAGTTCAGATGAGTCGATGAATCATACTAAAACAATGGACACATATCAGTCAATCAAATTAGGGCAGCAAAGCCTGACATGAACGTTGTCGAGATCCATGAGAAACTACATTTCAGACCCACATTTTTGCATAAAGTTTAATCACAAAGCAACGGTAGTGTGTGGAGGGAGGGCGGGAAGTGGCTTTTAAAACTACACAAACTTATCACAGGTTATATTGAACCAGAACAACTGTTATAACATTCTATTAAGACTAAACTTTATTGAAAAAGATTTAAAGATTTATGTTTAACAAGACAAGAAAAAAGCAATAGCAAATTGAACTATCGGCTAGGTTATGCATAGCGAGTAACTGTTTCTATTAATAAGGGAAGAGCCTCACCAACCCTCTTGACATTTTTTTCGTTTTTGACTTTTAAATTTTTTTATATTGTAATTTTGATATATTGGTACAAAGCACAAACGTACTAAAATTTCTCAGTGCACAGGACTAATGGAAGAGCGTCTCCCCTAGTCGTTTGTTCCCTTTAGCTCAGAAAGACCCCCCCTCCCTGTACCAGAATCACGCAAAAACACAGACAACATAAGAAAGGAACAAGTAAATAAATAAATAATCGAGATAAATAAATAATTTAATCAATGAGACAATCAATCAATCGATCAATAAATAAATACAGATTTTTCTCAAGAAGCTTTTTGTTCGATTTCTTTTGCTGCGGCGGTAAATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04934550_04955403.mRNA False 2848 mRNA 0.41 7 4933856 4956630

Neighbor

gene id symbol gene type direction distance location
CI01000010_04871254_04873119 DMRTA2, DMRT5 coding upstream 59938 4870540 ~ 4873918 (+)
CI01000010_04803003_04849985 FAF1 coding upstream 83871 4803003 ~ 4849985 (+)
CI01000010_04753467_04770912 RNF11L2, RNF11B, RNF11 coding upstream 162182 4753231 ~ 4771674 (+)
CI01000010_04735645_04749008 TTC39A coding upstream 184632 4735645 ~ 4749224 (+)
CI01000010_04696294_04717129 EPS15 coding upstream 216634 4696294 ~ 4717222 (+)
CI01000010_05012978_05018219 NA coding downstream 54749 5011379 ~ 5018346 (+)
CI01000010_05047527_05065421 NA coding downstream 90897 5047527 ~ 5066870 (+)
CI01000010_05185530_05200227 NA coding downstream 228491 5185121 ~ 5200514 (+)
CI01000010_05238328_05242974 NA coding downstream 280399 5237029 ~ 5243396 (+)
CI01000010_05308426_05318353 BEND5 coding downstream 351662 5308292 ~ 5319096 (+)
G63134 NA non-coding upstream 32214 4901433 ~ 4901642 (+)
G63131 NA non-coding upstream 54335 4879024 ~ 4879521 (+)
G63096 NA non-coding upstream 160157 4772221 ~ 4773699 (+)
G63058 NA non-coding upstream 342717 4590169 ~ 4591139 (+)
G63078 NA non-coding upstream 361362 4572277 ~ 4572494 (+)
G63162 NA non-coding downstream 26986 4983616 ~ 4992490 (+)
G63359 NA non-coding downstream 613541 5570171 ~ 5579186 (+)
G63328 NA non-coding downstream 634746 5591376 ~ 5591852 (+)
G63332 NA non-coding downstream 677557 5634187 ~ 5638232 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 279863 4640516 ~ 4683778 (+)
G62983 NA other upstream 484529 4448172 ~ 4449327 (+)
G62856 NA other upstream 993911 3937757 ~ 3939945 (+)
G62838 NA other upstream 1040063 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 1602670 3313695 ~ 3347796 (+)
G63403 NA other downstream 738815 5695445 ~ 5707085 (+)
G63405 NA other downstream 751341 5707971 ~ 5717250 (+)
CI01000010_05789479_05790006 NA other downstream 800323 5788332 ~ 5790204 (+)
G63524 NA other downstream 1417928 6374558 ~ 6374667 (+)
G63572 NA other downstream 1629298 6585928 ~ 6617806 (+)
G63151 NA non-coding upstream 1480 4953542 ~ 4953763 (+)
G63149 NA non-coding upstream 8575 4946465 ~ 4946668 (+)
G63384 NA non-coding downstream 643802 5642877 ~ 5643077 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G158493 NA unknown CI01000030 null 2279113 ~ 2279192 (+)
rainbow trout (Oncorhynchus mykiss) G2213395 elavl4 non-coding NC_050570.1 CM025857.1 22689204 ~ 22745824 (-)
eurasian perch (Perca fluviatilis) G97485 elavl4,LOC107657884 non-coding NC_053120.1 CM020917.1 22865827 ~ 22870448 (+)
mexican tetra (Astyanax mexicanus) G97637 NA non-coding NC_035907.1 CM008310.1 6141717 ~ 6143882 (+)