CI01000010_05012978_05018219


Basic Information

Item Value
gene id CI01000010_05012978_05018219
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5011379 ~ 5018346 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_05012978_05018219.mRNA
ATATAAAAGCAATTTTTCATTTAACTTTTGCTTGACACATTTTCTTCTTCCCTCTGTAGATGAAGTCCGGTTTTATGTTACACCGGATCAATAGATGCTTCTAAGAAGGTTCTCCCATAATTTCTCTGGCTCTCTCCCCTGGGTGATGGTGATGGGCCTGGTTGAGCCAGGACGTTAGTGGAAAGCAGAGGACCACACCCTGATCACATTACCCCATCATTAGAGCGAGCCTCATTTGATCAGTAATGAAGGCTGCTGTTCATTTGGCCCATGCCTCATGTTCTTTCTTAGCGTCTGTTTCTCAGAGATTGGTTCCTTGCTCCCGTCTAAGAGTCCAATGAATATCTCAGAGGAATTACTCTGACCTTTTGATTTGCTTCCTGGGGTGATTCAGGGTGACTATGTAATGACAGGTCTGTAGAGTAATAGGTGAGGTTGAATACAGGCCACTACAGAAACATAAACACCTGAATGCTGAAAGCCGGGATGACAGGGATTCGCAGATCATTGCTTGAGCAATTTTATGTTATTAGAGAATTAGGATTTTAAAGATAAATATTAAGCAGTTTGACTTTAGGTCACCACACTGTAAATAGATTTAAAATTTAATAAGTGATTTTCTAGCTTAAGATGATCTAGCCTACAAGATATAATACAACTTCTTTTTTTTTCTTAAATTTTTTACTACCCAGCCTTTTTTTTTTTGTTCAAACTGAAATCATTTAAGCTGAAAAAAAAAAAAAATTCATTTTCTCATTTAAATGCCTGGATGATGGAGAGATGATTGATTGTCTGAGGGTTTAATTGCTTGAAACCATTATCAGAGATTTTAAATAATGAAAAATACATGAACACAGATTGACACATCAAGTACTTGAAATAAGAGAAATAAGGTACAAAATCTTGGTTCTAGATTCTTCTAGAAATCTAATTGTTGTTCATATAAATTTCACATAAAAATCTTGTATGAAATGAAAGGAAGGAAAAGGAGGAGATGAAAGGACTGGGAGGATGATGGGAGGAGAAAATGCGAGGGTGCATGTGGGGGACGGCAGCATCAGTGACATGTGTTTTTCCTTTGGGCTACGGGTCTGGTGAAACACCTGCGTCTCTCCCTACCCACTCTCTCCAAATCTCACAATGTTGACCTCATCAGCTGACCCCACTCTCTTTCTCTCTCGTTCTCTCTATCCACCGTCGCTCCTTTGCAGTTTCCCCCGCTCTCTCTCTCTCTGGATGAATGGCTGTATTTTCTCTCAGTGCGTGGGATCTCCTTGGCCTTAAATTAACCTCTCTCGCAGATCTTCTGTGGAGACGAATTAGCGCCCAACGTGACAGTGCGGCTAATGTGTTGGTGAGGGTTCAGCGGAGTTTTCAAATAAAAAAGGCAAAAAATTCTTCAATGCTGTGCTGATGAACTGCAATGCAAAAATGAATGTTTTGGTGAAGTTACACAACTGCGGTGCATGCTGATGAAGATTAAAAACAAACAAACAAACAAACAAACGCAGCCATGATTATGCAAAGAAGTCAAATAGAGCTGGATTCATCAACTGCATGTGTGCTTTTTGCACAATCCACTATCTAGTCCATGCTGCCATGGGGCCGCTGGCTCCGTTAGCCGCTGGTAGCGGCCCAGCTCGCTGCCAAGGCGAGCAGAAAATTGGCTCCGGATGGAAATATGAGAGAGTTTGGCCCTCTGCCTGCTCCGGCAGGACTCGCGTCCTTCAGGCAGTATGGGGCAAACGGCCTGCTGGGCTTGGCATTGCACACACACACATACACACCCAGTGGCACGCCACTGACATGGTCCAGCCCCTGGCCATCGCTGTGATATCTACCATGGACACGAGCACTGCTTGTGACGCGGAGAGGCCTTCGCTATCAGACACGAGGCTATTGTGTCATATCAAAGCAGATTTAATGGTATGCAGGCTGTGTCAGCTCCAGGGAAGAACTACAGTCCAGAAGAACTACAGGGATACAAAAACCAATCCTATAAATGGGAAGCGTGATGACTGCGAGATAACAATATCCACAACCCGAGCGGATCTACAGGGGCAAGATTTCACGCGAAGCAATCCCTTTGTGAAATGCCACCGGCGGTATCTATGGTTACTGTTGTGGGGAAGATGGTTTTTGCGGACCACCCCATTTGCCCTTTCTCAGTCGGGGTTCATTGCGGGAGCTACCGTGCCTCATACGCTCCGTAACCCCTTACTGCCGTGACCTTTGACCTCCATGCACTGATATTCAGAGAACAGAACAATCTTTGACATTTATATCCATGTCCCTTTCTCGTCTCATTTCTTCTCCTCATTGTATCCCTCTTTTCACCCACGGGAAACAAGCACAA
>TU71982
GCCCTACACTATACTGTGCACATGCAGTCTTTTCTCAGATACCTCCTCTGTCAAGGTTGTGTGTATATGTGTCCTGCCTCTCTAGTTGCGCAAGTGTGTCTATGTGGTTTCCTTTTACTCTGTGCATGCAGTATGCAGGCTGTGTCAGCTCCAGGTGGGGTGTTGACATGGCTGTAGGTAGCTGGCAGGTGGCAGAACAGTGCTGCACCTGCGCAGGGCACAGAGAGAGCGAATGCACAGCCTCATTCCTCCGTGCCCTGGAAACTATGCATACTGTGCACTCCTGAACCTCTCCGGCTAACAAGCTGCTTTACCAACTACAAATCACATTGAGACTATATAGATGAGTTTTAAAGCTGCGCTTGGGAGCCCTTGGTGAGTATTGCAGTGAGTGTGGAGAGCTGGTAAAATGAGGATGAATGTGTTTTCTTATGCAGAGTGTGAAACCCAGCTAAAGACCTTGCACCATATATTTGTCTTTTAATTATTTCCTCTGTTTAAGCTTGTCATGCAATGTTTGCTCATTATAGAGAAACATTAAAAGCTTTACAAATAGCCTGAAAGTAGATGTGTATGTTTGTGTGTGAGGGGAGCGAAAGGAAAGGAAGACAGTGTTTGTAAGGCAGCTAACTGCATCTCAAGTTCCTGAGAGGATGAGGTGGGCTTCTGAACACACATAAACTGAGCTTTCCTATTCTCTCTCTCTTTTTTTTACTCTAACAAACCACACACGAGCTCTGGTTAATCCAATCTCAGCCTCCTCATCTTCCTGCAGCCTTTTTCTCAAAGTCCCTTTCTCCACACTCTCTTTTTTCCAAAACATCATCTCTTATTTGCACATTTCCTTTCCAACACAACACACAATTCTTCCATCATTCTCTCTTCTCATTCCCCTGTGGTCTTTTGGTTTCCCTTACCTTCTACTTGGTTTTTTTTTTTTTTTTTTTTAACATTTTTTCTTCACCAGCATTGGACCTCTCTTCGCACCAACAAACACACCTGATTTTCTGCCTCTTTTTGTTTCTACAGGGAAGAACTACAGTCCAGAAGAACTACAGGGATACAAAAACCAATCCTATAAATGGGAAGCGTGATGACTGGTATACCGATTGATGGAGGTCTAATGGAATAAATGCCTGGCTTCTCGGAAGAAAAAAAAAAAGGCAGGGTGTGTTTGTGTAAGGAAAGACATTTGCTCCCGGACAAGACAGCAACTTCTGCTAAAGGTCTGCTCTCACCTCTAATCAACCTAACTCCTCTTGACAGCGAGATAACAATATCCACAACCCGAGCGGATCTACAGGGGCAAGATTTCACGCGAAGCAATCCCTTTGTGAAATGCCACCGGCGGTATCTATGGTTACTGTTGTGGGGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_05012978_05018219.mRNA False 2356 mRNA 0.44 5 5011379 5018346
TU71982 True 1378 lncRNA 0.44 2 5015102 5018123

Neighbor

gene id symbol gene type direction distance location
CI01000010_04934550_04955403 NA coding upstream 54749 4933856 ~ 4956630 (+)
CI01000010_04871254_04873119 DMRTA2, DMRT5 coding upstream 137461 4870540 ~ 4873918 (+)
CI01000010_04803003_04849985 FAF1 coding upstream 161394 4803003 ~ 4849985 (+)
CI01000010_04753467_04770912 RNF11L2, RNF11B, RNF11 coding upstream 239705 4753231 ~ 4771674 (+)
CI01000010_04735645_04749008 TTC39A coding upstream 262155 4735645 ~ 4749224 (+)
CI01000010_05047527_05065421 NA coding downstream 29181 5047527 ~ 5066870 (+)
CI01000010_05185530_05200227 NA coding downstream 166775 5185121 ~ 5200514 (+)
CI01000010_05238328_05242974 NA coding downstream 218683 5237029 ~ 5243396 (+)
CI01000010_05308426_05318353 BEND5 coding downstream 289946 5308292 ~ 5319096 (+)
CI01000010_05359191_05385419 NA coding downstream 340845 5359191 ~ 5385684 (+)
G63162 NA non-coding upstream 18889 4983616 ~ 4992490 (+)
G63151 NA non-coding upstream 57616 4953542 ~ 4953763 (+)
G63149 NA non-coding upstream 64711 4946465 ~ 4946668 (+)
G63134 NA non-coding upstream 109737 4901433 ~ 4901642 (+)
G63359 NA non-coding downstream 551825 5570171 ~ 5579186 (+)
G63328 NA non-coding downstream 573030 5591376 ~ 5591852 (+)
G63332 NA non-coding downstream 615841 5634187 ~ 5638232 (+)
G63384 NA non-coding downstream 624531 5642877 ~ 5643077 (+)
G63386 NA non-coding downstream 626310 5644656 ~ 5645797 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 357386 4640516 ~ 4683778 (+)
G62983 NA other upstream 562052 4448172 ~ 4449327 (+)
G62856 NA other upstream 1071434 3937757 ~ 3939945 (+)
G62838 NA other upstream 1117586 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 1680193 3313695 ~ 3347796 (+)
G63403 NA other downstream 677099 5695445 ~ 5707085 (+)
G63405 NA other downstream 689625 5707971 ~ 5717250 (+)
CI01000010_05789479_05790006 NA other downstream 738607 5788332 ~ 5790204 (+)
G63524 NA other downstream 1356212 6374558 ~ 6374667 (+)
G63572 NA other downstream 1567582 6585928 ~ 6617806 (+)

Expression


Co-expression Network