G113680


Basic Information

Item Value
gene id G113680
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25400454 ~ 25401186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153591
aattattattaatatcagttataaaaaaaacacattcaatgtatttttatttaagacaGGCCAGACCTGCCAATCGTCCTTCACCACTTGGGGTCACAGCAGATTTATACAAGGCCCTTTTTGATATGTGACCAAACATTGCATAGctgattttaaaaacacacagcagcactacTGAGCTCAAAACCAACATCATATAATCCAAAACTAAAGCAAAATGGCTTTGAAAGGGAAAACAATGAGCAATTAAAGTGACCATCAGCCTTACTAGGAGTACAAATgagcaaaaacattaaaaaataaagagcattATGGGGTTTAATTAATTGAGTGACAAGATCACCGTGCTGCCTCTCTAAGCTCctgcttacttttttttaaaggagaactttgtTTCAAACTACAAGAGGTGCTGCCCTGGACTATAGAGTATAATCTTAAACATAGTCTTGGAACTAGATTTAAAgacaaattacattttctgaAGAATTATTTTAACAGGAGGAGAACAGTGGGGAATTACACATGTTTTTGAGCAGATGGTTGGTtgataaatattgtaaaatagtattaatgaaagaaaacacaaaaatgatgtAACATGGAGAATTTATAAAGCAGAAGGCTCAGTTATGTACtattaaacaacagaaaataaGTTTTAGGGTTTAGGCCGGAATGTCCCTTCAACAACATACAATTGTTTGATTTATGCCCTTATCTCAGCAttgat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153591 True 733 lncRNA 0.34 1 25400454 25401186

Neighbor

gene id symbol gene type direction distance location
LOC103023085 slc25a6,LOC108424711,LOC108273102,LOC108426068,LOC107752260,LOC107702905,LOC107557761,LOC103140121,LOC106926499 coding upstream 59373 25333141 ~ 25341081 (+)
rhbdf2 rhbdf2 coding upstream 81102 25265475 ~ 25319352 (+)
LOC111193666 NA coding upstream 141281 25257569 ~ 25259173 (+)
acox1 acox1 coding upstream 168053 25209804 ~ 25232401 (+)
evpl evpl coding upstream 196020 25175512 ~ 25204434 (+)
LOC103024355 LOC103024355,LOC108424794,LOC108273264,LOC106588570,LOC107681484,LOC107711600 coding downstream 127391 25528577 ~ 25536540 (+)
prpsap1 prpsap1,LOC106606986,LOC107731682,LOC106588225,LOC105013149 coding downstream 136507 25537693 ~ 25570327 (+)
LOC103034703 pltp,LOC107696437,LOC107744357,LOC107740259,LOC107666176,LOC107560511,LOC107587597 coding downstream 256667 25657853 ~ 25670407 (+)
ncoa5 NA coding downstream 286221 25687407 ~ 25700739 (+)
LOC103035650 NA coding downstream 633490 26034676 ~ 26038094 (+)
G113552 NA non-coding upstream 299571 25037538 ~ 25100883 (+)
G113557 NA non-coding upstream 324513 25075205 ~ 25075941 (+)
G113457 NA non-coding upstream 443540 24956470 ~ 24956914 (+)
G113456 NA non-coding upstream 456701 24943428 ~ 24943753 (+)
G113451 NA non-coding upstream 513339 24885431 ~ 24887115 (+)
G113682 NA non-coding downstream 17433 25418619 ~ 25510014 (+)
G113683 NA non-coding downstream 25274 25426460 ~ 25426736 (+)
G113703 NA non-coding downstream 207222 25608408 ~ 25608878 (+)
G113707 ctsa,LOC107587598,LOC107696438,LOC107744356 non-coding downstream 270283 25671469 ~ 25683917 (+)
G113711 NA non-coding downstream 300762 25701948 ~ 25755148 (+)
ube2o ube2o other upstream 3471 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 138233 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 146324 25250384 ~ 25254130 (+)
G113422 NA other upstream 925116 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 980775 24411009 ~ 24419679 (+)
G113979 snrpb,LOC101173217 other downstream 1946263 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 1989828 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 3806557 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 4481185 29882371 ~ 29887978 (+)
G114698 NA other downstream 4725149 30126335 ~ 30129896 (+)

Expression


Co-expression Network