G113703


Basic Information

Item Value
gene id G113703
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 25608408 ~ 25608878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153631
GTCAGCGCTGGtgtttctcccacactcagctctatctgcgattctgcTCCAcaagactacaatacccagaacacaccacaaAGAGACTCTGGCGATCATGTGACCTTACCAGGAAGCAATTCCCCTAATTACCAACACCTGTTTTACACACTATTTAAGCTCTCTCAGAACTCTCATTCCCTGCTGAGTATTGTTCGGTTCGTCCAGCTTTACAACGCACTTCTCTGATCTCTATTTTGTTACTCCGTGTATTACCTTTTTTCCGTGTACTCCGACCtcgatttttgcctgccctgtTTCCTGCTCTATTCGTATTTTTCTGACCATTGGACTGTTTAttcgactttgatttttgcctgctctctGATATTGCCCTGCCGGTGTTAGACCCCGGACTGTGTACCCCGTTACGGTATGGTTTTCTCTGTATGCATCTGTTTTTTGGTATATACCCTCTTTTGCCCGACTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153631 True 471 lncRNA 0.45 1 25608408 25608878

Neighbor

gene id symbol gene type direction distance location
prpsap1 prpsap1,LOC106606986,LOC107731682,LOC106588225,LOC105013149 coding upstream 38081 25537693 ~ 25570327 (+)
LOC103024355 LOC103024355,LOC108424794,LOC108273264,LOC106588570,LOC107681484,LOC107711600 coding upstream 71868 25528577 ~ 25536540 (+)
LOC103023085 slc25a6,LOC108424711,LOC108273102,LOC108426068,LOC107752260,LOC107702905,LOC107557761,LOC103140121,LOC106926499 coding upstream 267327 25333141 ~ 25341081 (+)
rhbdf2 rhbdf2 coding upstream 289056 25265475 ~ 25319352 (+)
LOC111193666 NA coding upstream 349235 25257569 ~ 25259173 (+)
LOC103034703 pltp,LOC107696437,LOC107744357,LOC107740259,LOC107666176,LOC107560511,LOC107587597 coding downstream 48975 25657853 ~ 25670407 (+)
ncoa5 NA coding downstream 78529 25687407 ~ 25700739 (+)
LOC103035650 NA coding downstream 425798 26034676 ~ 26038094 (+)
LOC111193667 NA coding downstream 450303 26059181 ~ 26062510 (+)
LOC111193668 NA coding downstream 460189 26069067 ~ 26074451 (+)
G113682 NA non-coding upstream 98394 25418619 ~ 25510014 (+)
G113683 NA non-coding upstream 181672 25426460 ~ 25426736 (+)
G113680 NA non-coding upstream 207222 25400454 ~ 25401186 (+)
G113552 NA non-coding upstream 507525 25037538 ~ 25100883 (+)
G113557 NA non-coding upstream 532467 25075205 ~ 25075941 (+)
G113707 ctsa,LOC107587598,LOC107696438,LOC107744356 non-coding downstream 62591 25671469 ~ 25683917 (+)
G113711 NA non-coding downstream 93070 25701948 ~ 25755148 (+)
G113732 NA non-coding downstream 397997 26006875 ~ 26007347 (+)
LOC111193688 NA non-coding downstream 449321 26058199 ~ 26059131 (+)
G113833 LOC108431845,LOC107587600,LOC107696435,LOC107560513,LOC105907715,LOC100690876 non-coding downstream 483836 26092714 ~ 26101625 (+)
ube2o ube2o other upstream 211425 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 346187 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 354278 25250384 ~ 25254130 (+)
G113422 NA other upstream 1133070 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 1188729 24411009 ~ 24419679 (+)
G113979 snrpb,LOC101173217 other downstream 1738571 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 1782136 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 3598865 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 4273493 29882371 ~ 29887978 (+)
G114698 NA other downstream 4517457 30126335 ~ 30129896 (+)

Expression


Co-expression Network