G113833 (LOC108431845,LOC107587600,LOC107696435,LOC107560513,LOC105907715,LOC100690876)


Basic Information

Item Value
gene id G113833
gene name LOC108431845,LOC107587600,LOC107696435,LOC107560513,LOC105907715,LOC100690876
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26092714 ~ 26101625 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153813
atatatatatatatatgtctattattatcagtacagtgatggtggtgctcggagctgaagctagaattatgggatgtaaacagtgtttttaataagcgtcttgtgcactttttttaagttattaatgcctcgttttaaatgtcaggaatCTCCGGATACTAgcgaggaggtgtggagctactttgagctggataacagtggaaaaagtgatttatcggggcaaattatgccacgtgtcacccagtctgaagggtgtttggacaaactgttaaaatttctggatctctgaacgctgtgggagaacagaggtgtgctattcatcaaatgtaagaactttttatcatgttttactacaacaaaagttctCCGACGTTATTACCATTTTTATTAGAACATTTTGCAGCAGTACAGTAATTTTCTTACCTCACCGGCGGATGAACCCCACTGGAAGTTCTCGGCTCGGCACCAGCGTTCCCGAATGCACGGATTTAACCGGCTCGTCATCCGTCGCCACTATCTCATAATCTCGAATTAACCCAGCACAGAGCCAGCTGCATCTGCAGCTCTGCCAGACGCCGGCCGATGCACATCCTCTTGCCGATGCCAAAAGGAACGTAGGCGAAGGGGTTGATGGAGTTTTTGTCCTGGAGCCAACGCTCAGGTAAGGTGTAATCTCCCAGCACGGTGTCTTTGTCCAGAGTCCGGCTCGTGAAGGGCACAGAGGGCGTGAGTCTGTGTAagtaagaaaaacacacacacacacacacacactctgtaagCTCCTTGCTGCTGCTGGGCTGAGAATTTCTTCTTTTAAGTTCTTTTAAGTAAGTGTGAATGCATAAGCCGAGAGGTATGAGCCACATTATGGTATGGTGTGCATGAATGCTTTTTAAGTCATGATAATCCCAccaaaacataataaacattCCCCGAACCGTGCTGCTGCATTATCCTTGCTTAATGTCCGAGGATATTTCTTCCTGTCTCATGATGTGACTGGGTGACTGGGTGATTGCTAAAGCGTTATATTCACATGATGAGTTTGTTCTGGGACTTTTCCTAAGATCACAACCTTTTCTCTGGCATTTGACCAGGTCATCTGCTCAAGACTCTCAAAGCTAACTTAATCTACTAAAGCACACAGATGAGAGAGTAACTCTGTGTCAGGCTGTGATCGACTATACAGTGGAATGCTTAAACCAATCAGGGTTTCTAGTGGTTGACTGgaattaggcctgtcatgataaaatTTTTGTACAATATAAACAATGAATTATAGTATTCTCATTTAAAGACTATTAAAGGAACATGAAACCCACTGATTTTTGCTGATTACACCCTCAGCACAAATCTGAAAAAGGCGAAAAAATGGGAGGTGTAGTTTGGGCGggacactgggtgatgtatgggtttagagatgGGACAGAAGTGAGACCCAGAtattgatctgcatattgtgatgtctCTGTGTGCCTATAACACAGCTAAACCCGAGAGAAGGGTTCAGGGGcagaaattatattattaactataataaaagtgttttttaaagattagcaaatgtttataaaatgttatgcaGGACAGGTAAGATTTATTACTTCAAAGGGACACAagtcagctattaatgaaaaaaatatatatatgttttagggATTAGTGGCGCTTTAATAATGACACAGATCAGGGTTAAAAATAAGATACTAGATTATATGCTGGGCTGCACTCTAAATGTATGTCCTACTGGATAAACAACGTTAATTTAACTTgattgtaaattattttaaagttttcttAAGTGCATTTGCGAATGAGGACATacaagtataaatataaattattttttaaatcaaattttagttacctattgtaaaacaaaaaagatgcccAAGCTATTATTGTTTCGCTTCCTTGCATTTGGTTTTTGCCCTTTTGTTATGTAGTaatgtattatgtttttttatataattttacttttacttttcattTACCTTAATGTGCATGGATTATACAGCATATTTAACAATCAACAATTACGGGTCTTGTGGCTCTGTActcttaatttttaaagtaTGCCTTCTTTAGcacctttcattttcattttaatcatttttggtGAGTGTACCAATGCTATCTATGCCATTACAGATAAATCATAGAGTTCAGTAATGCCGAACAAACCCTGTCAGTGTTTGTTTGAGTCCACATTGCTCCACACAGAGTTACCTCAGATGAACTCCCAACAGAGTCACCTCCACATTGACTTTCCTGTCAACTGATTAAGAGCCCCTCCTTTATCTAAACTCTACTATTGAGCCCCTTCCTGGCAAGGATGTTGATAACAATGACAGTGCTGATTCTCGGACCTACCTCATGGATTCTTTCAGACAAGCTTTGAGATACGGCATGTTCTTGATGTGCTCAGCACTTGGTGTCTCTCCAGCGGGCACCACCTCCGTGATCTCCTTCAGCAGCTTGTCCTGGGCGCGGGGGTTCCGCGAGAGGTTGAAAATAGCCCACAGTGTGCTGTTAGCGGTTGTCTCCACCCCCCCGATCTGGAGCTCGGTGGTCGCGGCGTAAAGCTCCTTCTTGGTGAGGGGGCTGTTGTGGTAGATGTCGCAGAGGAAGTCGTCGGATGGGCCGCTCGAGTGTCTCTTCAGCTTTTTGTCAATGTAGAGTTTGGCTGTGCTAAAAATACGGTCCCACGCAGCTGTGTGTTCCTGCCATGTCCTTGTGTTCAGGCTCTTGTGCAGTTCCACGGGCGTCACCATCATCGTGCCAAATGTACTCATCATCGTTTTAATGGCATTGATGAAGTCCATGGCCTCCTCATCCACCTTTTCTTGCAGAAGGCCAAACCGTTTATCATAGAGCACAAAACAGATGGTTTCAAACGACCACTTGTTTAACTCAAAGTACAAGTCGTTAATCTTCCCGTTGACATTGACTGTTCCAACTCTGTCAATGAAGTCTGCTAGAACCTCGTTAATCTTCCCGTCCAGTTTCACCACCTCGCTGGGCTTCATGAGCTTCTGCTGAAACGCGCTCCTCACTCTCTGCCAGTCCTTCCCCTCCAGGATGAGGAGTCCGTAAGCCTCGTCCCGCAGGTCTCTGTAGGCTTTCCAGGGTTTGATCTCCAGTCTCTGAGGGTAGCTGCCCTCCTTCCGATACAGCGCCTCCAGTAAGCACGGCGCGCCGATGTGGACCGACTCGAAGGAGCCGAGCTTCATCCGGAAGATTTTACCGAATTTCTTGTGGTAGTCGATCAGAGCCTCGTGCTGCCTCTTCAGGCCCCCTCTGCGCACGAGATCGAAGAGGCTGCCCAGCAATGGCCAGTTGGTGGGTCCGGGGATAGAGTGCAGGCTGTGGGGGTGGTGAGGGCAGCCGCGCGCCGCAGCAGGAGCCGGAGCATCCTTGGCCTCGAGCACGCAGGCTGAGGAGGTGGGCTTGCTGTGCTGCAGCGCCGCgagctcctgctgctggagCAGCCCGGCAATGCGAGAGTGCGCTCTTCTCATGGTTAgctaatgtctctctctctttctctctctctttctttctctttccctctttctctctctctcttctgcacGCTTTCTCTTTTTGGGTCAACATCCCtccacacaatatatataccCGCTCGTGTGTTTATCACGGCCTCGCCGGTGGCCAATCAGGATCCCGAGCGCGCGGGATGTAGAGGTCGAGCCCACCACGCGCGTATGGATCCGTTCCGCGCTGCTACAGGGATCGCATGACCCCGCGTGCACGGAGGAAGTGCCCTCTCTACCCCCGC

Function

NR:

description
PREDICTED: 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153813 True 3799 lncRNA 0.46 10 26092714 26101625

Neighbor

gene id symbol gene type direction distance location
LOC111193668 NA coding upstream 18263 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 30204 26059181 ~ 26062510 (+)
LOC103035650 NA coding upstream 54620 26034676 ~ 26038094 (+)
ncoa5 NA coding upstream 391975 25687407 ~ 25700739 (+)
LOC103034703 pltp,LOC107696437,LOC107744357,LOC107740259,LOC107666176,LOC107560511,LOC107587597 coding upstream 422307 25657853 ~ 25670407 (+)
rtfdc1 rtfdc1 coding downstream 169418 26271043 ~ 26319493 (+)
tfap2c tfap2c coding downstream 222066 26323691 ~ 26345773 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 1474609 27576234 ~ 27640363 (+)
ralgapb ralgapb coding downstream 1874756 27976381 ~ 28022819 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 1940147 28041772 ~ 28127236 (+)
LOC111193688 NA non-coding upstream 33583 26058199 ~ 26059131 (+)
G113732 NA non-coding upstream 85367 26006875 ~ 26007347 (+)
G113711 NA non-coding upstream 337566 25701948 ~ 25755148 (+)
G113707 ctsa,LOC107587598,LOC107696438,LOC107744356 non-coding upstream 408797 25671469 ~ 25683917 (+)
G113703 NA non-coding upstream 483836 25608408 ~ 25608878 (+)
G113846 NA non-coding downstream 104564 26206189 ~ 26262106 (+)
G113868 NA non-coding downstream 190835 26292460 ~ 26296051 (+)
G113867 NA non-coding downstream 219111 26320736 ~ 26412822 (+)
G113897 NA non-coding downstream 358413 26460038 ~ 26460275 (+)
G113902 NA non-coding downstream 404179 26505804 ~ 26506031 (+)
ube2o ube2o other upstream 695731 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 830493 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 838584 25250384 ~ 25254130 (+)
G113422 NA other upstream 1617376 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 1673035 24411009 ~ 24419679 (+)
G113979 snrpb,LOC101173217 other downstream 1245824 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 1289389 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 3106118 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 3780746 29882371 ~ 29887978 (+)
G114698 NA other downstream 4024710 30126335 ~ 30129896 (+)

Expression


Co-expression Network