G113846


Basic Information

Item Value
gene id G113846
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26206189 ~ 26262106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153831
GAAGTGCAATGTGTGAAGAGCGGGTGTTCAGGGCCGAGTCTCCATTCCGGCTGTAGGTTTGAAGGTTATGAGTGAAGTTTGTCGGTTAGTAAAAAGCCTCCGCTCTCGGACGAGATTTGAATTTGAATCTGTTGACCGTTAACCGTTAACGGTCTGCGGTAACGCTTTTATCGTTACTGTCGTTACTATAGTTACCGGCGTTACAGCTCTCAAACACAgcggtaacagcagcagcagcgcgcgCTTCACTGTGCGAGGctgtagttagtgtgtgtgttcagtctgaTTCCGCAGCGGGATGACTGAGCTCTATCcgtccctcctcctcctccgagcggcggggcgtgtgtgtgtgtgtgtgtgtgtgtgagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153831 True 375 lncRNA 0.53 2 26206189 26262106

Neighbor

gene id symbol gene type direction distance location
LOC111193668 NA coding upstream 131738 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 143679 26059181 ~ 26062510 (+)
LOC103035650 NA coding upstream 168095 26034676 ~ 26038094 (+)
ncoa5 NA coding upstream 505450 25687407 ~ 25700739 (+)
LOC103034703 pltp,LOC107696437,LOC107744357,LOC107740259,LOC107666176,LOC107560511,LOC107587597 coding upstream 535782 25657853 ~ 25670407 (+)
rtfdc1 rtfdc1 coding downstream 8937 26271043 ~ 26319493 (+)
tfap2c tfap2c coding downstream 61585 26323691 ~ 26345773 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 1314128 27576234 ~ 27640363 (+)
ralgapb ralgapb coding downstream 1714275 27976381 ~ 28022819 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 1779666 28041772 ~ 28127236 (+)
G113833 LOC108431845,LOC107587600,LOC107696435,LOC107560513,LOC105907715,LOC100690876 non-coding upstream 104564 26092714 ~ 26101625 (+)
LOC111193688 NA non-coding upstream 147058 26058199 ~ 26059131 (+)
G113732 NA non-coding upstream 198842 26006875 ~ 26007347 (+)
G113711 NA non-coding upstream 451041 25701948 ~ 25755148 (+)
G113707 ctsa,LOC107587598,LOC107696438,LOC107744356 non-coding upstream 522272 25671469 ~ 25683917 (+)
G113868 NA non-coding downstream 30354 26292460 ~ 26296051 (+)
G113867 NA non-coding downstream 58630 26320736 ~ 26412822 (+)
G113897 NA non-coding downstream 197932 26460038 ~ 26460275 (+)
G113902 NA non-coding downstream 243698 26505804 ~ 26506031 (+)
G113908 NA non-coding downstream 353830 26615936 ~ 26616188 (+)
ube2o ube2o other upstream 809206 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 943968 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 952059 25250384 ~ 25254130 (+)
G113422 NA other upstream 1730851 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 1786510 24411009 ~ 24419679 (+)
G113979 snrpb,LOC101173217 other downstream 1085343 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 1128908 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 2945637 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 3620265 29882371 ~ 29887978 (+)
G114698 NA other downstream 3864229 30126335 ~ 30129896 (+)

Expression


Co-expression Network