G113897


Basic Information

Item Value
gene id G113897
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26460038 ~ 26460275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153895
aagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatttactgatgatcagtgatggtttggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153895 True 238 lncRNA 0.41 1 26460038 26460275

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c coding upstream 114265 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 140545 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 385587 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 397528 26059181 ~ 26062510 (+)
LOC103035650 NA coding upstream 421944 26034676 ~ 26038094 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 1115959 27576234 ~ 27640363 (+)
ralgapb ralgapb coding downstream 1516106 27976381 ~ 28022819 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 1581497 28041772 ~ 28127236 (+)
arfrp1 arfrp1 coding downstream 1681653 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 1693832 28154107 ~ 28167135 (+)
G113867 NA non-coding upstream 47216 26320736 ~ 26412822 (+)
G113868 NA non-coding upstream 163987 26292460 ~ 26296051 (+)
G113846 NA non-coding upstream 197932 26206189 ~ 26262106 (+)
G113833 LOC108431845,LOC107587600,LOC107696435,LOC107560513,LOC105907715,LOC100690876 non-coding upstream 358413 26092714 ~ 26101625 (+)
LOC111193688 NA non-coding upstream 400907 26058199 ~ 26059131 (+)
G113902 NA non-coding downstream 45529 26505804 ~ 26506031 (+)
G113908 NA non-coding downstream 155661 26615936 ~ 26616188 (+)
G113930 NA non-coding downstream 356942 26817217 ~ 26879565 (+)
G113937 NA non-coding downstream 576869 27037144 ~ 27065794 (+)
G113955 NA non-coding downstream 737699 27197974 ~ 27198195 (+)
ube2o ube2o other upstream 1063055 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 1197817 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 1205908 25250384 ~ 25254130 (+)
G113422 NA other upstream 1984700 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 2040359 24411009 ~ 24419679 (+)
G113979 snrpb,LOC101173217 other downstream 887174 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 930739 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 2747468 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 3422096 29882371 ~ 29887978 (+)
G114698 NA other downstream 3666060 30126335 ~ 30129896 (+)

Expression


Co-expression Network