G113978 (ddx27,LOC107665994,LOC107553908,LOC107587605,LOC107681294)


Basic Information

Item Value
gene id G113978
gene name ddx27,LOC107665994,LOC107553908,LOC107587605,LOC107681294
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27338862 ~ 27340774 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153991
GCAAACCCACTGGAACACAGGCCTTCTGGACTGGCGTTGGCTGCTTGAAGCCCATGGTGGTAATGGCCTTCAGCAGAGGTCTGGAGAGATTCATGTCCTGGAATGTGAGGTTCTCATCATACTGCGACGCATCTTCAAAGAAGGCTTCAGGCTCTGCTGCAGCCTTCTTTTTGCCTTTCTTGCCTTTCTCCCTTAGAGTATCTGCTTTTTTAAGTACTTCTTCATCCCCTGATGAAAActcatcttcctcatcttcatcaaTATCATCACCACCCTCTTCATtgccatcttcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcctcatcctcatcaaCGTCCAGATCATCATTTTTCTTGCCCACTTTCTGAGCTTTCTCCTCAGTTTTGCGCTTTTTACGCACTTTCTCTATCTTCTCATCCAGTGTGGTGGGAGCTTTC

Function

symbol description
ddx27 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; musculature system; and retina. Orthologous to human DDX27 (DEAD-box helicase 27).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX27

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153991 True 458 lncRNA 0.45 5 27338862 27340774

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c coding upstream 993089 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1019369 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 1264411 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 1276352 26059181 ~ 26062510 (+)
LOC103035650 NA coding upstream 1300768 26034676 ~ 26038094 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 235460 27576234 ~ 27640363 (+)
ralgapb ralgapb coding downstream 635607 27976381 ~ 28022819 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 700998 28041772 ~ 28127236 (+)
arfrp1 arfrp1 coding downstream 801154 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 813333 28154107 ~ 28167135 (+)
G113965 NA non-coding upstream 53818 27274383 ~ 27285044 (+)
G113962 NA non-coding upstream 72317 27266332 ~ 27266545 (+)
G113960 NA non-coding upstream 81423 27257202 ~ 27257439 (+)
G113955 NA non-coding upstream 140667 27197974 ~ 27198195 (+)
G113937 NA non-coding upstream 273068 27037144 ~ 27065794 (+)
G113981 NA non-coding downstream 13012 27353786 ~ 27358799 (+)
G113982 LOC108431834,LOC108271999,LOC105030547,LOC107681287,LOC106565280 non-coding downstream 22790 27363564 ~ 27368916 (+)
G113985 NA non-coding downstream 30200 27370974 ~ 27371471 (+)
G113988 NA non-coding downstream 39401 27380175 ~ 27385144 (+)
G114008 NA non-coding downstream 128206 27468980 ~ 27469300 (+)
ube2o ube2o other upstream 1941879 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2076641 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2084732 25250384 ~ 25254130 (+)
G113422 NA other upstream 2863524 24474078 ~ 24475338 (+)
LOC103027315 manbal,LOC107666036,LOC107744407 other upstream 2919183 24411009 ~ 24419679 (+)
G113979 snrpb,LOC101173217 other downstream 6675 27347449 ~ 27352444 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other downstream 50240 27391014 ~ 27489522 (+)
LOC103044650 LOC108427558 other downstream 1866969 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 2541597 29882371 ~ 29887978 (+)
G114698 NA other downstream 2785561 30126335 ~ 30129896 (+)

Expression


Co-expression Network