LOC103037845 (necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391)


Basic Information

Item Value
gene id LOC103037845
gene name necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27391014 ~ 27489522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154011
AGGGagcgacagcagcagcagcatcagcagcagcatcatttCAGTACAGTATCTGTAACACAGCCTGTGCAGCATCAGCACCACCAGTCTGAGATTGAGAAAGCAGTTTCAGACAGCACAAAGAAAAGGCTCCTGCCCGCCGAATCTGACCAATTACATTACCCTCTGCTTCTCAGACTCCTCAGTAATCTTCCAGATCCTCCTGAAGATGCTGGCCTGCACAGAGATGATCACTATGTGTCTCCAGTCGGCGAAGCGAGAGCATCTGCGCTCCAAGCAAcaacagcagctgcagcagaacCATGGACTTTCCATTTTTCACGACATTTTCCGGCGTGCAGACAAAAACGatgACGGAAAGCTCTCATTTGAAGAGTTCAAAGCATACTTTGCTGACGGGATTCTGACAACCGATGAGCTCCAGGAGCTGTTCTATTCCATTGACGGCCGACAGGCAAACAATCTCGACACAGACAAGCTGTCAGGTAGGATCATTTCCTTCTGTTTACCTTTCATTATTTCATGTAATAgagtaatgtgtgttttttataatgttctGGAATT
>XM_022675092.1
TTGGCTGAGAGGAGGAGGGagcgacagcagcagcagcatcagcagcagcatcatttCAGTACAGTATCTGTAACACAGCCTGTGCAGCATCAGCACCACCAGTCTGAGATTGAGAAAGCAGTTTCAGACAGCACAAAGAAAAGGCTCCTGCCCGCCGAATCTGACCAATTACATTACCCTCTGCTTCTCAGACTCCTCAGTAATCTTCCAGATCCTCCTGAAGATGCTGGCCTGCACAGAGATGATCACTATGTGTCTCCAGTCGGCGAAGCGAGAGCATCTGCGCTCCAAGCAAcaacagcagctgcagcagaacCATGGACTTTCCATTTTTCACGACATTTTCCGGCGTGCAGACAAAAACGatgACGGAAAGCTCTCATTTGAAGAGTTCAAAGCATACTTTGCTGACGGGATTCTGACAACCGATGAGCTCCAGGAGCTGTTCTATTCCATTGACGGCCGACAGGCAAACAATCTCGACACAGACAAGCTGTCAGTGTCCCTCAAGCCTCGATCTGCTGTGacaaatctctctctgtctctcttcctgCAGGAGTACCAGGGCTCCTCTGTGTTAGGGCAGTTCGTGACACGCTTCATGTTGAAGGAGACGTCCAGCCAACTGCTGTCTCTTCAGATGTCTCTGCAGTGTGCCATGGAGGCCGTGGAGGAGCAGAGTAGCCCTGCACCggCCGAGGTGAAGGTACCAGAGCATCTGTCGGTACAGAAGAATAACAGGAGATGTGGACGCaaagtgcagaaaaacatgTGTCTGTCTCCTACAGACCCGTACTCTGGAATCCTCACTACAGGTGTTAGTGTGGATACAGATGATCACTGGTCTTCTCAGATCAACagactccagcagctcattgaCAAACTGGAATGCCAGAGTCCAAAGCTGGAGCCCCTGAAAGAAGACCCTCTGGCCAGCACGTATAAATCAAACATTCTGTTGGTGCAGAGGCAGATGGCAGTGACAGAGGAAAATCTTGAAGAGTTCCAAAAGGCCCTGAAAAGCTATGCTGATTCCACCACCAATCAGAGTGACAACCTTCATGTGTCCATCCAGAAGCTGCCTGAGAAGAGCTGctacataatatatgagttcTGGCAGGATCGCATCTCCTGGATGAGTTATCTGCAGTCTGAGGCCAGTAAGACTTTCCAGCGCTGTATCATAGACATGCTGGAGGATCCTGAACTCATCTCTACGATGCTTATGCCTGcatccTGGTGGATCATGACAAACAATTAACTCCCGAAAGAGCAGTGTGCTGTGCCTCCACCCCTCCAAAACAACCACAATCTGAAAGCGATCCTGCGTGTGTTCGCCTCTCCACGAGCTAGAGAACAGCGTACTCATCTCCTCCTCACTTGACTGTACCTCATGGCTTCGTTTTTGTGTTCCTTCAACAATCcttctgtacaaaaaaaagagtaaaaaaaaaaaagaagaaaacagcaGCCAGGCATGGTTCTAATCTCTCTAGCATGTATAGAAAATTAAAGTGAGGCCAGTGGCGAAGCTTTTGAAGCTGACGCGGCTTTGATGTGGCAACCGCTCACGGATTAGAAAAGTGAAGAACTTTCCTAAAAAAACGTAATGAAACACAAGGGAAAGCGGAAAGAAAGGAATACCACTACTTGCTTTGACGTCTTCGACTAGGTGTTTACTACCCGGGGTGCGATTTacgaaaaaattaaataagaaaaatagcTGTTTAAGATTGCATGCATGTTAAAACTTTAGTTTCAGACATAGCTGACTTAAAGCCATCCTTGCAACTCCATGCTTGCTCAAGGACACTATTTCTAATGATAAGATCAATCTGTGTGATTATGTGGATAGAATAGTCCTTATGTGGAACTTAGCTGTTCTTCTGCCTTGTGGTTCCTCAGTCGATATGTTAATGTTCCCGAATCCCGACGATTCTGTTTGATTTAAGCTGTACGTATGCCGATTCACTGAATCAACTTTTGCTTTTTCTTATCATTTTCCGAACATGGAACTCTGTATATGGTGTGTTAAACTGCTTGACGTAAAGAAATATGCTGAGATTTATtaatggatttatttatttgaggtTTATCTAATGTATTTAAGCATATAAGAAGAAATAAACCTAAGAATATCATTTGTGTA

Function

symbol description
necab3 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in Golgi cis cisterna and endoplasmic reticulum. Orthologous to human NECAB3 (N-terminal EF-hand calcium binding protein 3).

NR:

description
PREDICTED: N-terminal EF-hand calcium-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154011 False 564 TUCP 0.47 4 27391029 27444946
XM_022675092.1 True 2149 mRNA 0.45 12 27391014 27489522

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c coding upstream 1045241 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1071521 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 1316563 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 1328504 26059181 ~ 26062510 (+)
LOC103035650 NA coding upstream 1352920 26034676 ~ 26038094 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 86712 27576234 ~ 27640363 (+)
ralgapb ralgapb coding downstream 486859 27976381 ~ 28022819 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 552250 28041772 ~ 28127236 (+)
arfrp1 arfrp1 coding downstream 652406 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 664585 28154107 ~ 28167135 (+)
G113988 NA non-coding upstream 5870 27380175 ~ 27385144 (+)
G113985 NA non-coding upstream 19543 27370974 ~ 27371471 (+)
G113982 LOC108431834,LOC108271999,LOC105030547,LOC107681287,LOC106565280 non-coding upstream 22098 27363564 ~ 27368916 (+)
G113981 NA non-coding upstream 32215 27353786 ~ 27358799 (+)
G113978 ddx27,LOC107665994,LOC107553908,LOC107587605,LOC107681294 non-coding upstream 50240 27338862 ~ 27340774 (+)
G114011 NA non-coding downstream 23877 27513399 ~ 27514868 (+)
G114021 NA non-coding downstream 61542 27551064 ~ 27637540 (+)
G114020 NA non-coding downstream 153132 27642654 ~ 27646150 (+)
G114026 NA non-coding downstream 172018 27661540 ~ 27665975 (+)
G114110 NA non-coding downstream 515985 28005507 ~ 28006349 (+)
G113979 snrpb,LOC101173217 other upstream 38570 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 1994031 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2128793 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2136884 25250384 ~ 25254130 (+)
G113422 NA other upstream 2915676 24474078 ~ 24475338 (+)
LOC103044650 LOC108427558 other downstream 1718221 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 2392849 29882371 ~ 29887978 (+)
G114698 NA other downstream 2636813 30126335 ~ 30129896 (+)
G114841 NA other downstream 3360787 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 4403763 31893285 ~ 31894351 (+)

Expression


Co-expression Network