G114011


Basic Information

Item Value
gene id G114011
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27513399 ~ 27514868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154035
TTCACTtaaattctgtttatttctttatttcatgttGCCTACATACCAAGATTATCTTTGTGTCTCGTgagaaaacaaaatgaaacgtGGCTCACAaaatacagatttcttttcctcataatcatatttgtttttttttacagataggTCATttcataatgaaaaaataatggaattCATTCTGTTACATATCACGTGAATAGAAGGTAGTTGATGAGAGATATAAAGGTGAGAAACAACAAAAGTTTAAACTTTACCCTCTCTAAATGtgacaaggaaataaacatatatacatacaatatgCTCCTGAGATTTAGATAGTTTGAGTTGCAACACCTACAGGCAAATACCagaaaaaataacaacacaATTTCACAGAGCTGGACCCAAACCTGGCACTGAAGAAGGCTCattttacccaaagttctgcaTGTTGAAGAGGTTATAATACTACATTATGGCATTCTGCAGCAGTGATGATCTGTTTTAAATCATATCAAGAGATTCTGACACAgtctaacaaaataaaatatcactaTTAAGAGTGTTCCATGTGACATATGACTCTGAAGTTTAATTTATTCTGTACTCAGAGATTAACAAAGGAGttttttttagctctgtggCACAGATTTGGACCAAAGTTTGTCTCAGTaatgttaaaatgcatttagaaataatgaaattatttatatcagtaaatatttCTTCGGAAATCAAGGATATTAGGACAGAGGTTATAGAGTTTGGCCTCTTTATCTGCAGGGGccaaatatgccccatatcatccattctaaagcatgtttgaaCAAAGTGTAAAAAATTACTGGGTCTCGGAAAGctgtgggctattcaacaaagtactctttattatgttttaccaCACAAATTGACTACAAGTCCATTTTTACATTGAAGTTTAATATAAGTGACAGTCTGAAAGGTTTTTTGAAAGAATGTGTAGCTGCACCTAGCatgctaaaaagtacttttaaaacgtgAATTGTGGTGCAGACTCTTTTCAGAATGGATGATTTTGGCGATGTTAACGAGAATTTTTGCCAGCACTCTTTAGTAATAATTCTGCTTTTCATAGGCTTAACAATTGTGTTTAGTTTTATGATTAATTTCACTAAAAGTTAaggtttctctcttttttgctattttggagattttcaagattttcaattcaattcagtgtaAACCAAGATGAAAAGGCCTAACATATTTCTGAAAATTTAGCTGcctgttatttttgtattttgcattttagcattttacacttctacttcCCGTTTGGTCCAAATCTGAAACCTACTGCTGAATTTAAATGGACAACTTAGGTCCAATAATTAACCTGAATGGgagtttaaagaaaatattaatccAAAAAATGTTTCACTTACGTACGTTGAacataatcaatcaatcaatcaaaagaAATACTCGCTTCTTTAGTTTCAGGTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154035 True 1470 lncRNA 0.32 1 27513399 27514868

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c coding upstream 1167626 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1193906 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 1438948 26069067 ~ 26074451 (+)
LOC111193667 NA coding upstream 1450889 26059181 ~ 26062510 (+)
LOC103035650 NA coding upstream 1475305 26034676 ~ 26038094 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 61366 27576234 ~ 27640363 (+)
ralgapb ralgapb coding downstream 461513 27976381 ~ 28022819 (+)
kcnq2 kcnq2,LOC100537363 coding downstream 526904 28041772 ~ 28127236 (+)
arfrp1 arfrp1 coding downstream 627060 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 639239 28154107 ~ 28167135 (+)
G114008 NA non-coding upstream 44099 27468980 ~ 27469300 (+)
G113988 NA non-coding upstream 128255 27380175 ~ 27385144 (+)
G113985 NA non-coding upstream 141928 27370974 ~ 27371471 (+)
G113982 LOC108431834,LOC108271999,LOC105030547,LOC107681287,LOC106565280 non-coding upstream 144483 27363564 ~ 27368916 (+)
G113981 NA non-coding upstream 154600 27353786 ~ 27358799 (+)
G114021 NA non-coding downstream 36196 27551064 ~ 27637540 (+)
G114020 NA non-coding downstream 127786 27642654 ~ 27646150 (+)
G114026 NA non-coding downstream 146672 27661540 ~ 27665975 (+)
G114110 NA non-coding downstream 490639 28005507 ~ 28006349 (+)
G114127 NA non-coding downstream 551822 28066690 ~ 28130292 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 23877 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 160955 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2116416 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2251178 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2259269 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 1692875 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 2367503 29882371 ~ 29887978 (+)
G114698 NA other downstream 2611467 30126335 ~ 30129896 (+)
G114841 NA other downstream 3335441 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 4378417 31893285 ~ 31894351 (+)

Expression


Co-expression Network