G114127


Basic Information

Item Value
gene id G114127
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28066690 ~ 28130292 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154198
TTTTAGTATTATTGgagcctTTTTTCTTCAGACAGTGGAGAAAGGctgattttattactgttttaagaTCTTTTGAAACTCTTCTAAGCCTCATAAACATCAACAGTCTAAGAAAGCTCTTTGGATCTGATCATTGTGATCACAATCATTTTAACAATCAAGACCCAGCCAAACTAAATGTGAGAGTTGTAAATGGGACAGACTTTAGACCTCTTGACCCAAGATCGTTTCACTTgtcataaagagagagagagagagagagagagagagagagagagagaaataaaaataaagagattgaTTTTACCATTTACAAAGCACCATGAACCATGTAAAAATCAACCCACACTCTGAACATAAAGAACCAATGGTGTCAAAAATAGAACCACATCTTGAGCATTCTAAACaaacagtgaaaaacacttTTAGTTCTAGATCTTCTAGAAATTTCAGACCAACTATTTAGcatcagaagaagaaaaataactggTGATATGGCAAAATTTACCACAACACCTGGACAGACAACACACCATCGCCCGACACACCCCATTCTACAAATCAATCGATGTCAACAGTAGGGAGATGCAGCTCATGTATGTGATGGTGACAGGGAACAACAAAGTCCTTTAGCTCACTCAATAAACTGCAATAAGAAACCAAAACTACACAACTATGTTATAAACAcatagggccctatcttacaccctgcataaggttcattgtgatgctcattgctatcttacaccttgccAACAGTCTAATTTCATGCGTTCTGATTTGCATTGTTTAAACAGCAATGCAGTGCTGGCTCCAAGTTGTCCAGTGGGCTAAGTCAGTTCGAAACCTttcatgtagtttgccatcagctaccaaagccctgagagagcataattgaccttgctctctcttcgggtgggtagatggtgctctttcttcTCATCATTCCttgggtgatgtagatcagcacaaggctgcatctgtgagctgatgtatcggaagcgagtcgctgcacttttctTCCGAgttcgctgtgatgctactcagcaatgctgagGCTTAAGGGTGCCCAGTCCATTGTTCTGAGgacaccagcagcttatttattcattttgcaattattaatattttctctGCTTGCTTCTATCAGTAAGAGCTTCTTGGTGAGCTGCACATCCATTCAGACCCATAGCTCCATTCTCTCTTCATGTAGAATATGTTTAGTACTCTTTATTTGAGATGATACACCAATTGTCCATTGTTGTATTAAATTCAGTTTTCTCTAAATCTTTTAATAATGTCTGCAATCGAGCAGAATTTTAAAAGCCTAATTATCTCTTGAAGTATCTTCtcaaaaatgaataatttgaacttaatgtatgttttgaatggtaattaaaatcataaaggatggtctctgtttttttacacattactgtaaGAAATGTGTGTTCAACTTTTTTCAATTGCACCTTCAACAAAGTGCATCTCCAAAGAGCACAGTTTAGTTAAAGAGCACTGTTCTGTCTTCCATCTATGCTTCTGTCCACATATATAATACAGACATTTCTTAGAAAGTACATTTTAAGTGCACACTTAGAACTACAAAGGGTTTTTTTGAGTGACAAAACAAAGAATGAGCCACTTTtgtaaataatgtgtaaatgcGTGGGTGAATAAAGAACCCTAGACATTGAGATTCTCACACGCATCTCAATAGCCAAGGCATCGCTCAAAAAACCCTTtgtatcactttttttttaaatattaaaatagtataAGTTGAGACATACTAAACAGGTCATATGATTTGCAAATCAATCAATTTGAGGTTAGTGAAAGTGTTAAAAGGAACATGCAGCAAAGGAAACAATATGCAGGCCTTAATTTACAGATGCATCTGGAATGCTTGATCTTTCCTAGACCTTTCCCAGCGGTCTGATCGGAAAGAGCAACAGGATTGtcataaaaatgtgtaataaaaaaaaaagctcaaatgCATTTTGAGCTTGCAGACACAAGTCGATAAGGTGTCTTGGTGTGTTATACACCTTAGAAATATCCGTCATGGTTTAtgacttgtgttttttttatcgcaTATCTTGTCATCACAGCTGCCTTGCttggtttgaaaaaaaaaaaataataatttgatttttccaaagaatatactgtattttgctAATTTGCCTTGGGTGTTGATGATAACGCAGATgttttgtttcgttttttttgttACGTAAAAGTGTCCTCTCGCTGCAAAATCTGTTTTGAACACACATTGTGCTTGTGAATGTATTACTGAATGCTGTTGCACACATATAGACACACCCACAAATGCACAGAAacgcacacacagaaacacacacacatacacaatttttgcttttatttaagaggattttttttttttgctctcaagtgtataaatacagtatcttCACTCTAGGACTGGCAGGGATAGACAACCATGAATCTTATACTGTAAGTCGTATATTGGACAGCAGTTTGATTATTGGTACATACTGTATTGATaatttttacatacagtacaggccaaaagtttggaccttctctttttaatgtgttttctttattttcatgactatttacactgtagtttctcactgaaggcatcaaaactatgaatgaacacatgtggagttttatgtacttaacaaaaaaaagatgaactaactaaaaaaaaaaaagatattctattttttttaaaatagccaccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcaagaggtggccacctgaaatgaatagttttccaacagtcttaaaggaaggagttcccagaggtgtttattagcacttgttgcccctttgccgtcttcactctgtgctgcagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggacagctcatttttgttaagtacataaaactccacatgtgttcattcatagttttgatgcttca
>TU154199
atcattctctcaatgagcttcaagaggtggtcacttgaaatgaaaagttttccaacagtcttgaaggaaggagttcccagaggtgttttttattagcacttgttgcccctttgccgtcttcactctgtgctgcagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggacagctcatttttgttaagtacataaaactccacatgtgttcattcatagttttgatgcttcagtgagaatctacaatgtaaataccCTACTGGAAAAAACAGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154198 True 3017 lncRNA 0.37 4 28066690 28130249
TU154199 False 289 lncRNA 0.42 2 28087744 28130292

Neighbor

gene id symbol gene type direction distance location
ralgapb ralgapb coding upstream 43871 27976381 ~ 28022819 (+)
snta1 snta1,LOC107681301,LOC107587638 coding upstream 426327 27576234 ~ 27640363 (+)
tfap2c tfap2c coding upstream 1720917 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1747197 26271043 ~ 26319493 (+)
LOC111193668 NA coding upstream 1992239 26069067 ~ 26074451 (+)
arfrp1 arfrp1 coding downstream 11636 28141928 ~ 28149421 (+)
stmn3 stmn3 coding downstream 23815 28154107 ~ 28167135 (+)
LOC103025927 NA coding downstream 42282 28172574 ~ 28198880 (+)
sp7 sp7 coding downstream 94367 28224659 ~ 28229015 (+)
LOC103025620 LOC103025620,LOC108431823 coding downstream 141529 28271821 ~ 28292098 (+)
G114110 NA non-coding upstream 60341 28005507 ~ 28006349 (+)
G114026 NA non-coding upstream 400715 27661540 ~ 27665975 (+)
G114020 NA non-coding upstream 420540 27642654 ~ 27646150 (+)
G114021 NA non-coding upstream 429150 27551064 ~ 27637540 (+)
G114011 NA non-coding upstream 551822 27513399 ~ 27514868 (+)
G114154 NA non-coding downstream 41219 28171511 ~ 28171989 (+)
G114159 NA non-coding downstream 86915 28217207 ~ 28217435 (+)
G114168 NA non-coding downstream 167202 28297494 ~ 28297775 (+)
G114162 LOC108431801 non-coding downstream 182348 28312640 ~ 28316397 (+)
G114191 NA non-coding downstream 274917 28405209 ~ 28455339 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 577168 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 714246 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2669707 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2804469 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2812560 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 1077451 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1752079 29882371 ~ 29887978 (+)
G114698 NA other downstream 1996043 30126335 ~ 30129896 (+)
G114841 NA other downstream 2720017 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3762993 31893285 ~ 31894351 (+)

Expression


Co-expression Network