G114162 (LOC108431801)


Basic Information

Item Value
gene id G114162
gene name LOC108431801
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28312640 ~ 28316397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154248
GTACCTGCTCTAGAATGACTATGAAGCGTGATGCTGGGGGCAGCTGGTAGTGCACAACCACGAACACTGGGAAGTAGCCCAACACACCCATCTGAGCCACCAACAGGATCACAGCTGTGGCCACCGATACTGACATGTTCCAGCTGCTACGATGATACAGGTCTGCCCACTGACTCAGAACATGATACGGTCCCAGCAGGGTGTAGGTGAACATGATGAACCACGCCCATACCACAGTCCCCAACAGCCCAAAGGCGTAGAAGAACAGGTCGAAGTCTAGAACCAGCCTCCCCTGGTCAATGTAGTCTACTGCCAGCGTGCTTAtgatgaagaggaagagagCAGCGATGAACATGTGATAGATAGTCCTGACGTGGCTGATCTCAAACAGCTCATCAAGTATGGACCGCCTGGCCACAAACACCTTCCCATCCTCCATTCTGTGCctCCTTGCTTTCTCatcagtgtgagagtgtgtgttccCGTTTATGTCCCACTGTGTGCTTTGAGAGAGGGACCTCAGTGAGTCTGTAAGAGCTTTATCCAAGACTTCACTCATCTGGACCTTCATCTGCTCTATGACCTCCATCTTTATCCTCTGT

Function

NR:

description
PREDICTED: sterol O-acyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154248 True 602 lncRNA 0.51 4 28312640 28316397

Neighbor

gene id symbol gene type direction distance location
LOC103025620 LOC103025620,LOC108431823 coding upstream 20542 28271821 ~ 28292098 (+)
sp7 sp7 coding upstream 83625 28224659 ~ 28229015 (+)
LOC103025927 NA coding upstream 113760 28172574 ~ 28198880 (+)
stmn3 stmn3 coding upstream 145505 28154107 ~ 28167135 (+)
arfrp1 arfrp1 coding upstream 163219 28141928 ~ 28149421 (+)
LOC111193756 NA coding downstream 25590 28341987 ~ 28349481 (+)
LOC111193755 NA coding downstream 35586 28351983 ~ 28361479 (+)
dctn2 dctn2 coding downstream 112844 28429241 ~ 28454020 (+)
ddit3 ddit3,LOC106582666 coding downstream 170311 28486708 ~ 28492312 (+)
arhgap9 arhgap9 coding downstream 201234 28517631 ~ 28589490 (+)
G114168 NA non-coding upstream 14865 28297494 ~ 28297775 (+)
G114159 NA non-coding upstream 95205 28217207 ~ 28217435 (+)
G114154 NA non-coding upstream 140651 28171511 ~ 28171989 (+)
G114127 NA non-coding upstream 182348 28066690 ~ 28130292 (+)
G114110 NA non-coding upstream 306291 28005507 ~ 28006349 (+)
G114191 NA non-coding downstream 88812 28405209 ~ 28455339 (+)
LOC111193758 NA non-coding downstream 417993 28734390 ~ 28736858 (+)
LOC111193757 NA non-coding downstream 420468 28736865 ~ 28755521 (+)
G114318 NA non-coding downstream 508318 28824715 ~ 28827924 (+)
G114390 NA non-coding downstream 556210 28872607 ~ 28872896 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 823118 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 960196 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2915657 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 3050419 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 3058510 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 891346 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1565974 29882371 ~ 29887978 (+)
G114698 NA other downstream 1809938 30126335 ~ 30129896 (+)
G114841 NA other downstream 2533912 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3576888 31893285 ~ 31894351 (+)

Expression


Co-expression Network