G114433


Basic Information

Item Value
gene id G114433
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29183414 ~ 29260686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154660
tTTTGCAGCAagctgcaccaagagatgtgtggataTAAGCTatagaagcacgtagcgcatgcgtaaaagcaaaaagacacatgaattccaatttgaccgttcacattaatgtcgcatgtccatggattagATACGTATTCAATTTAGGACTACATgtaaaaatgactcaaattgaaaaaaatctaatttggaaCATTCACACAGccttaaaaaatcagatttgagtcacttcagcctggtaatgtgaacgtagcctatgtAAACTGGTAGTATGCAGAGatcagtaaaatcttaaaacaAGTCTTAAATAGAGTTTGACAACCTGCATATTTGGCTTGTATGATTTTTGAATGGCTGTCTGATTTCATGCAGtcactttgtttttatttcatctaAATGTCCAATACATTTCTTTATTGTATGTGAGCATCACGGTTCAGATATTTCACAGATTTATCATGGaaataaaatgttcataagAG

Function

NR:

description
PREDICTED: glycine-rich cell wall structural protein 1.8-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00120 Primary bile acid biosynthesis
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU154660 True 482 lncRNA 0.34 2 29183414 29260686

Neighbor

gene id symbol gene type direction distance location
shmt2 shmt2,LOC103359782,LOC106515133 coding upstream 51351 29090843 ~ 29132063 (+)
nxph4 nxph4 coding upstream 97970 28994206 ~ 29085444 (+)
stac3 stac3 coding upstream 318631 28849141 ~ 28864783 (+)
r3hdm2 r3hdm2 coding upstream 336059 28770225 ~ 28847355 (+)
arhgap9 arhgap9 coding upstream 593924 28517631 ~ 28589490 (+)
rbp7 rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738 coding downstream 7020 29267706 ~ 29271449 (+)
c13h3orf67 NA coding downstream 299045 29559731 ~ 29609556 (+)
LOC103032776 NA coding downstream 359674 29620360 ~ 29630245 (+)
LOC111193761 LOC108427564 coding downstream 370239 29630925 ~ 29638287 (+)
LOC103043238 pbrm1l,LOC108427561 coding downstream 421964 29682650 ~ 29697639 (+)
G114402 NA non-coding upstream 197775 28931924 ~ 28985639 (+)
G114405 NA non-coding upstream 205956 28976831 ~ 28977458 (+)
G114400 NA non-coding upstream 251818 28931350 ~ 28931596 (+)
G114399 NA non-coding upstream 256597 28926415 ~ 28926817 (+)
G114392 NA non-coding upstream 302559 28877249 ~ 28880855 (+)
G114439 tardbp,LOC108427558,LOC105025427 non-coding downstream 20772 29281458 ~ 29282414 (+)
G114474 NA non-coding downstream 197341 29458027 ~ 29557691 (+)
G114475 NA non-coding downstream 214160 29474846 ~ 29475567 (+)
G114480 NA non-coding downstream 261121 29521807 ~ 29599080 (+)
G114623 NA non-coding downstream 572510 29833196 ~ 29833502 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 1693892 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 1830970 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 3786431 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 3921193 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 3929284 25250384 ~ 25254130 (+)
LOC111193669 NA other downstream 621685 29882371 ~ 29887978 (+)
G114698 NA other downstream 865649 30126335 ~ 30129896 (+)
G114841 NA other downstream 1589623 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 2632599 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 2692328 31953014 ~ 31962885 (+)

Expression


Co-expression Network